Hb_000586_030

Information

Type -
Description -
Location Contig586: 20091-22967
Sequence    

Annotation

kegg
ID brp:103833877
description probable LRR receptor-like serine/threonine-protein kinase At1g51860
nr
ID EEE62769.1
description hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
swissprot
ID Q9C821
description Proline-rich receptor-like protein kinase PERK15 OS=Arabidopsis thaliana GN=PERK15 PE=2 SV=1
trembl
ID B9FJ25
description Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_17572 PE=3 SV=1
Gene Ontology
ID GO:0004674
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49973: 20455-21314
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000586_030 0.0 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
2 Hb_003606_060 0.1253044202 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
3 Hb_038564_010 0.1293704346 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
4 Hb_000168_010 0.1375575161 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3-like isoform X1 [Populus euphratica]
5 Hb_003780_020 0.1384322487 - - PREDICTED: prolyl 4-hydroxylase subunit alpha-1 isoform X2 [Glycine max]
6 Hb_012678_010 0.1441546355 - - PREDICTED: outer envelope protein 61-like [Gossypium raimondii]
7 Hb_001894_070 0.1463458971 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X1 [Jatropha curcas]
8 Hb_099116_010 0.1466377485 - - conserved hypothetical protein [Ricinus communis]
9 Hb_158163_010 0.1485049897 - - protein binding protein, putative [Ricinus communis]
10 Hb_000679_190 0.1497980805 - - PREDICTED: uncharacterized protein LOC105637641 isoform X1 [Jatropha curcas]
11 Hb_138475_010 0.1534749025 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Populus euphratica]
12 Hb_000019_180 0.15362011 transcription factor TF Family: SET Histone-lysine N-methyltransferase family protein [Populus trichocarpa]
13 Hb_000107_110 0.1560356971 - - nucleic acid binding protein, putative [Ricinus communis]
14 Hb_142343_010 0.1570435606 - - ATP binding protein, putative [Ricinus communis]
15 Hb_004881_030 0.157633245 - - PREDICTED: uncharacterized protein LOC105629532 isoform X1 [Jatropha curcas]
16 Hb_002200_040 0.1603537026 - - PREDICTED: uncharacterized protein LOC105629143 isoform X1 [Jatropha curcas]
17 Hb_004303_040 0.1613857966 - - PREDICTED: fumarate hydratase 1, mitochondrial [Jatropha curcas]
18 Hb_091349_010 0.1628204405 - - hypothetical protein EUGRSUZ_C02287 [Eucalyptus grandis]
19 Hb_006274_040 0.1631511372 - - PREDICTED: DENN domain and WD repeat-containing protein SCD1-like [Fragaria vesca subsp. vesca]
20 Hb_012022_050 0.1642705938 - - hypothetical protein EUGRSUZ_B02804 [Eucalyptus grandis]

Gene co-expression network

sample Hb_000586_030 Hb_000586_030 Hb_003606_060 Hb_003606_060 Hb_000586_030--Hb_003606_060 Hb_038564_010 Hb_038564_010 Hb_000586_030--Hb_038564_010 Hb_000168_010 Hb_000168_010 Hb_000586_030--Hb_000168_010 Hb_003780_020 Hb_003780_020 Hb_000586_030--Hb_003780_020 Hb_012678_010 Hb_012678_010 Hb_000586_030--Hb_012678_010 Hb_001894_070 Hb_001894_070 Hb_000586_030--Hb_001894_070 Hb_000525_090 Hb_000525_090 Hb_003606_060--Hb_000525_090 Hb_002200_040 Hb_002200_040 Hb_003606_060--Hb_002200_040 Hb_004046_030 Hb_004046_030 Hb_003606_060--Hb_004046_030 Hb_000107_110 Hb_000107_110 Hb_003606_060--Hb_000107_110 Hb_000019_180 Hb_000019_180 Hb_003606_060--Hb_000019_180 Hb_142343_010 Hb_142343_010 Hb_038564_010--Hb_142343_010 Hb_088327_010 Hb_088327_010 Hb_038564_010--Hb_088327_010 Hb_003697_050 Hb_003697_050 Hb_038564_010--Hb_003697_050 Hb_038564_010--Hb_000019_180 Hb_138475_010 Hb_138475_010 Hb_038564_010--Hb_138475_010 Hb_000215_310 Hb_000215_310 Hb_000168_010--Hb_000215_310 Hb_099116_010 Hb_099116_010 Hb_000168_010--Hb_099116_010 Hb_004040_030 Hb_004040_030 Hb_000168_010--Hb_004040_030 Hb_004466_060 Hb_004466_060 Hb_000168_010--Hb_004466_060 Hb_002611_020 Hb_002611_020 Hb_000168_010--Hb_002611_020 Hb_003780_020--Hb_012678_010 Hb_012678_020 Hb_012678_020 Hb_003780_020--Hb_012678_020 Hb_007558_100 Hb_007558_100 Hb_003780_020--Hb_007558_100 Hb_002150_040 Hb_002150_040 Hb_003780_020--Hb_002150_040 Hb_005218_020 Hb_005218_020 Hb_003780_020--Hb_005218_020 Hb_004881_030 Hb_004881_030 Hb_003780_020--Hb_004881_030 Hb_012678_010--Hb_012678_020 Hb_012678_010--Hb_007558_100 Hb_000784_070 Hb_000784_070 Hb_012678_010--Hb_000784_070 Hb_012678_010--Hb_138475_010 Hb_001894_070--Hb_000107_110 Hb_091349_010 Hb_091349_010 Hb_001894_070--Hb_091349_010 Hb_010042_020 Hb_010042_020 Hb_001894_070--Hb_010042_020 Hb_000671_130 Hb_000671_130 Hb_001894_070--Hb_000671_130 Hb_001894_070--Hb_004881_030 Hb_003052_180 Hb_003052_180 Hb_001894_070--Hb_003052_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.270889 0.543023 1.08127 5.32404 0.454523 3.56706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.1288 1.68668 1.94904 3.27376 3.0672

CAGE analysis