Hb_038564_010

Information

Type -
Description -
Location Contig38564: 730-1930
Sequence    

Annotation

kegg
ID pop:POPTR_0014s13840g
description hypothetical protein
nr
ID XP_012084998.1
description PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
swissprot
ID Q84K11
description Serine/threonine-protein phosphatase 5 OS=Solanum lycopersicum GN=PP5 PE=1 SV=1
trembl
ID U5FQI1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s13840g PE=4 SV=1
Gene Ontology
ID GO:0005635
description serine threonine-protein phosphatase 5 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_038564_010 0.0 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
2 Hb_000586_030 0.1293704346 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
3 Hb_142343_010 0.1410792096 - - ATP binding protein, putative [Ricinus communis]
4 Hb_088327_010 0.1413235904 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
5 Hb_003697_050 0.1455540031 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
6 Hb_000019_180 0.1536145262 transcription factor TF Family: SET Histone-lysine N-methyltransferase family protein [Populus trichocarpa]
7 Hb_138475_010 0.1555114211 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Populus euphratica]
8 Hb_000369_120 0.1581751913 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B [Jatropha curcas]
9 Hb_002748_030 0.1653556436 - - nucleotide binding protein, putative [Ricinus communis]
10 Hb_000072_130 0.1663563513 - - hypothetical protein OsJ_28567 [Oryza sativa Japonica Group]
11 Hb_000125_010 0.1677507627 transcription factor TF Family: mTERF -
12 Hb_000679_190 0.1681846474 - - PREDICTED: uncharacterized protein LOC105637641 isoform X1 [Jatropha curcas]
13 Hb_002631_010 0.1682110449 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
14 Hb_008159_010 0.1696449701 - - PREDICTED: 66 kDa stress protein [Jatropha curcas]
15 Hb_002150_040 0.1698343097 - - PREDICTED: CMP-sialic acid transporter 1 isoform X3 [Jatropha curcas]
16 Hb_003141_070 0.1700206571 - - PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]
17 Hb_158163_010 0.1708582015 - - protein binding protein, putative [Ricinus communis]
18 Hb_000212_450 0.1709880476 - - PREDICTED: basic leucine zipper and W2 domain-containing protein 2 [Jatropha curcas]
19 Hb_003529_030 0.1714286214 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
20 Hb_000140_280 0.1721848283 - - hypothetical protein B456_001G157900 [Gossypium raimondii]

Gene co-expression network

sample Hb_038564_010 Hb_038564_010 Hb_000586_030 Hb_000586_030 Hb_038564_010--Hb_000586_030 Hb_142343_010 Hb_142343_010 Hb_038564_010--Hb_142343_010 Hb_088327_010 Hb_088327_010 Hb_038564_010--Hb_088327_010 Hb_003697_050 Hb_003697_050 Hb_038564_010--Hb_003697_050 Hb_000019_180 Hb_000019_180 Hb_038564_010--Hb_000019_180 Hb_138475_010 Hb_138475_010 Hb_038564_010--Hb_138475_010 Hb_003606_060 Hb_003606_060 Hb_000586_030--Hb_003606_060 Hb_000168_010 Hb_000168_010 Hb_000586_030--Hb_000168_010 Hb_003780_020 Hb_003780_020 Hb_000586_030--Hb_003780_020 Hb_012678_010 Hb_012678_010 Hb_000586_030--Hb_012678_010 Hb_001894_070 Hb_001894_070 Hb_000586_030--Hb_001894_070 Hb_152371_010 Hb_152371_010 Hb_142343_010--Hb_152371_010 Hb_002311_340 Hb_002311_340 Hb_142343_010--Hb_002311_340 Hb_163975_010 Hb_163975_010 Hb_142343_010--Hb_163975_010 Hb_142343_010--Hb_138475_010 Hb_000228_110 Hb_000228_110 Hb_142343_010--Hb_000228_110 Hb_002748_030 Hb_002748_030 Hb_142343_010--Hb_002748_030 Hb_000946_110 Hb_000946_110 Hb_088327_010--Hb_000946_110 Hb_091349_010 Hb_091349_010 Hb_088327_010--Hb_091349_010 Hb_002043_040 Hb_002043_040 Hb_088327_010--Hb_002043_040 Hb_000704_040 Hb_000704_040 Hb_088327_010--Hb_000704_040 Hb_000381_010 Hb_000381_010 Hb_088327_010--Hb_000381_010 Hb_002284_230 Hb_002284_230 Hb_003697_050--Hb_002284_230 Hb_001268_050 Hb_001268_050 Hb_003697_050--Hb_001268_050 Hb_002735_050 Hb_002735_050 Hb_003697_050--Hb_002735_050 Hb_025098_010 Hb_025098_010 Hb_003697_050--Hb_025098_010 Hb_001390_130 Hb_001390_130 Hb_003697_050--Hb_001390_130 Hb_094836_010 Hb_094836_010 Hb_003697_050--Hb_094836_010 Hb_003305_040 Hb_003305_040 Hb_000019_180--Hb_003305_040 Hb_000800_090 Hb_000800_090 Hb_000019_180--Hb_000800_090 Hb_002392_010 Hb_002392_010 Hb_000019_180--Hb_002392_010 Hb_006277_010 Hb_006277_010 Hb_000019_180--Hb_006277_010 Hb_005701_120 Hb_005701_120 Hb_000019_180--Hb_005701_120 Hb_002110_100 Hb_002110_100 Hb_000019_180--Hb_002110_100 Hb_007558_100 Hb_007558_100 Hb_138475_010--Hb_007558_100 Hb_008970_030 Hb_008970_030 Hb_138475_010--Hb_008970_030 Hb_002414_060 Hb_002414_060 Hb_138475_010--Hb_002414_060 Hb_000917_130 Hb_000917_130 Hb_138475_010--Hb_000917_130 Hb_062537_010 Hb_062537_010 Hb_138475_010--Hb_062537_010 Hb_000787_160 Hb_000787_160 Hb_138475_010--Hb_000787_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.807727 1.43758 1.6301 9.12343 1.06524 6.51073
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.83172 2.93263 7.57687 5.28468 4.37251

CAGE analysis