Hb_152371_010

Information

Type -
Description -
Location Contig152371: 185-1157
Sequence    

Annotation

kegg
ID tcc:TCM_026308
description RNA-binding KH domain-containing protein
nr
ID XP_007030532.1
description RNA-binding KH domain-containing protein [Theobroma cacao]
swissprot
ID Q9SR13
description Flowering locus K homology domain OS=Arabidopsis thaliana GN=FLK PE=1 SV=1
trembl
ID A0A061F946
description RNA-binding KH domain-containing protein OS=Theobroma cacao GN=TCM_026308 PE=4 SV=1
Gene Ontology
ID GO:0005634
description rna-binding kh domain-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_152371_010 0.0 - - RNA-binding KH domain-containing protein [Theobroma cacao]
2 Hb_025194_100 0.0796951159 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
3 Hb_000095_080 0.0813862033 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Jatropha curcas]
4 Hb_000310_090 0.0880141442 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
5 Hb_003777_320 0.0915734085 - - PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog [Jatropha curcas]
6 Hb_002289_080 0.0932496326 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
7 Hb_002284_230 0.0932842863 - - PREDICTED: uncharacterized protein At5g43822 [Jatropha curcas]
8 Hb_000504_070 0.0940891479 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
9 Hb_001314_050 0.0953846174 - - PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Jatropha curcas]
10 Hb_005914_170 0.0963844404 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
11 Hb_025098_010 0.0973926142 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]
12 Hb_001571_050 0.0980966307 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Populus euphratica]
13 Hb_000429_150 0.0981909969 - - hypothetical protein JCGZ_06799 [Jatropha curcas]
14 Hb_002994_030 0.0990451092 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-like [Pyrus x bretschneideri]
15 Hb_003633_050 0.0993491806 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
16 Hb_010964_040 0.1006341039 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
17 Hb_006277_110 0.101150694 - - protein with unknown function [Ricinus communis]
18 Hb_001168_020 0.1016091994 - - PREDICTED: translation initiation factor eIF-2B subunit gamma [Jatropha curcas]
19 Hb_002000_080 0.1024347667 - - PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Jatropha curcas]
20 Hb_001268_410 0.1025715778 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20 [Jatropha curcas]

Gene co-expression network

sample Hb_152371_010 Hb_152371_010 Hb_025194_100 Hb_025194_100 Hb_152371_010--Hb_025194_100 Hb_000095_080 Hb_000095_080 Hb_152371_010--Hb_000095_080 Hb_000310_090 Hb_000310_090 Hb_152371_010--Hb_000310_090 Hb_003777_320 Hb_003777_320 Hb_152371_010--Hb_003777_320 Hb_002289_080 Hb_002289_080 Hb_152371_010--Hb_002289_080 Hb_002284_230 Hb_002284_230 Hb_152371_010--Hb_002284_230 Hb_025194_100--Hb_002289_080 Hb_000599_300 Hb_000599_300 Hb_025194_100--Hb_000599_300 Hb_025194_100--Hb_000310_090 Hb_002994_030 Hb_002994_030 Hb_025194_100--Hb_002994_030 Hb_000696_330 Hb_000696_330 Hb_025194_100--Hb_000696_330 Hb_000072_320 Hb_000072_320 Hb_000095_080--Hb_000072_320 Hb_001999_310 Hb_001999_310 Hb_000095_080--Hb_001999_310 Hb_000069_210 Hb_000069_210 Hb_000095_080--Hb_000069_210 Hb_001016_120 Hb_001016_120 Hb_000095_080--Hb_001016_120 Hb_007416_090 Hb_007416_090 Hb_000095_080--Hb_007416_090 Hb_000656_010 Hb_000656_010 Hb_000095_080--Hb_000656_010 Hb_001168_020 Hb_001168_020 Hb_000310_090--Hb_001168_020 Hb_001189_070 Hb_001189_070 Hb_000310_090--Hb_001189_070 Hb_025098_010 Hb_025098_010 Hb_000310_090--Hb_025098_010 Hb_000310_090--Hb_002289_080 Hb_086085_020 Hb_086085_020 Hb_000310_090--Hb_086085_020 Hb_001314_050 Hb_001314_050 Hb_000310_090--Hb_001314_050 Hb_005188_080 Hb_005188_080 Hb_003777_320--Hb_005188_080 Hb_003777_320--Hb_001168_020 Hb_003847_030 Hb_003847_030 Hb_003777_320--Hb_003847_030 Hb_007881_030 Hb_007881_030 Hb_003777_320--Hb_007881_030 Hb_003777_320--Hb_000696_330 Hb_000504_070 Hb_000504_070 Hb_003777_320--Hb_000504_070 Hb_002289_080--Hb_001168_020 Hb_005144_050 Hb_005144_050 Hb_002289_080--Hb_005144_050 Hb_006478_020 Hb_006478_020 Hb_002289_080--Hb_006478_020 Hb_002289_080--Hb_025098_010 Hb_003697_050 Hb_003697_050 Hb_002284_230--Hb_003697_050 Hb_019654_030 Hb_019654_030 Hb_002284_230--Hb_019654_030 Hb_000046_350 Hb_000046_350 Hb_002284_230--Hb_000046_350 Hb_002284_230--Hb_025098_010 Hb_003633_050 Hb_003633_050 Hb_002284_230--Hb_003633_050 Hb_003126_070 Hb_003126_070 Hb_002284_230--Hb_003126_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0124 13.814 12.8742 30.2331 8.68281 28.9059
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.5065 28.9638 24.4631 33.6141 27.2169

CAGE analysis