Hb_163975_010

Information

Type -
Description -
Location Contig163975: 1097-3299
Sequence    

Annotation

kegg
ID rcu:RCOM_1445080
description histone-lysine n-methyltransferase, suvh, putative (EC:2.1.1.43)
nr
ID XP_012067355.1
description PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
swissprot
ID Q8GZB6
description Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 OS=Arabidopsis thaliana GN=SUVH4 PE=1 SV=2
trembl
ID A0A067L3Q8
description Histone-lysine N-methyltransferase OS=Jatropha curcas GN=JCGZ_26876 PE=4 SV=1
Gene Ontology
ID GO:0005634
description histone-lysine n- h3 lysine-9 specific suvh4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_163975_010 0.0 - - PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
2 Hb_082793_010 0.1091243126 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_142343_010 0.1210501137 - - ATP binding protein, putative [Ricinus communis]
4 Hb_002748_020 0.1218732733 - - transducin family protein [Populus trichocarpa]
5 Hb_084670_010 0.1300982344 - - PREDICTED: thiamine biosynthetic bifunctional enzyme TH1, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_002908_060 0.1365177808 - - unnamed protein product, partial [Coffea canephora]
7 Hb_000053_060 0.1385808478 - - hypothetical protein VITISV_022618 [Vitis vinifera]
8 Hb_004411_060 0.1405840461 - - acetolactate synthase, putative [Ricinus communis]
9 Hb_007558_100 0.1426530202 - - PREDICTED: uncharacterized protein LOC105649092 isoform X2 [Jatropha curcas]
10 Hb_002748_030 0.1461819161 - - nucleotide binding protein, putative [Ricinus communis]
11 Hb_019337_020 0.1488763402 - - K+ uptake permease 11 isoform 1 [Theobroma cacao]
12 Hb_138475_010 0.1503542171 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Populus euphratica]
13 Hb_000656_010 0.1504328375 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
14 Hb_004159_020 0.151064519 - - Putative dihydrodipicolinate reductase 2, chloroplastic [Aegilops tauschii]
15 Hb_098315_080 0.1526006884 - - methylmalonate-semialdehyde dehydrogenase, putative [Ricinus communis]
16 Hb_006275_070 0.15328897 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
17 Hb_007023_030 0.1535152912 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Jatropha curcas]
18 Hb_000095_080 0.1535915994 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Jatropha curcas]
19 Hb_000841_050 0.1540608304 - - hypothetical protein L484_019972 [Morus notabilis]
20 Hb_012678_010 0.1542901208 - - PREDICTED: outer envelope protein 61-like [Gossypium raimondii]

Gene co-expression network

sample Hb_163975_010 Hb_163975_010 Hb_082793_010 Hb_082793_010 Hb_163975_010--Hb_082793_010 Hb_142343_010 Hb_142343_010 Hb_163975_010--Hb_142343_010 Hb_002748_020 Hb_002748_020 Hb_163975_010--Hb_002748_020 Hb_084670_010 Hb_084670_010 Hb_163975_010--Hb_084670_010 Hb_002908_060 Hb_002908_060 Hb_163975_010--Hb_002908_060 Hb_000053_060 Hb_000053_060 Hb_163975_010--Hb_000053_060 Hb_082793_010--Hb_002748_020 Hb_004411_060 Hb_004411_060 Hb_082793_010--Hb_004411_060 Hb_082793_010--Hb_084670_010 Hb_012678_010 Hb_012678_010 Hb_082793_010--Hb_012678_010 Hb_082793_010--Hb_002908_060 Hb_152371_010 Hb_152371_010 Hb_142343_010--Hb_152371_010 Hb_002311_340 Hb_002311_340 Hb_142343_010--Hb_002311_340 Hb_138475_010 Hb_138475_010 Hb_142343_010--Hb_138475_010 Hb_000228_110 Hb_000228_110 Hb_142343_010--Hb_000228_110 Hb_002748_030 Hb_002748_030 Hb_142343_010--Hb_002748_030 Hb_001629_030 Hb_001629_030 Hb_002748_020--Hb_001629_030 Hb_000019_200 Hb_000019_200 Hb_002748_020--Hb_000019_200 Hb_005601_040 Hb_005601_040 Hb_002748_020--Hb_005601_040 Hb_000095_080 Hb_000095_080 Hb_002748_020--Hb_000095_080 Hb_000656_010 Hb_000656_010 Hb_002748_020--Hb_000656_010 Hb_006275_070 Hb_006275_070 Hb_002748_020--Hb_006275_070 Hb_055062_040 Hb_055062_040 Hb_084670_010--Hb_055062_040 Hb_000358_050 Hb_000358_050 Hb_084670_010--Hb_000358_050 Hb_011537_060 Hb_011537_060 Hb_084670_010--Hb_011537_060 Hb_001159_010 Hb_001159_010 Hb_084670_010--Hb_001159_010 Hb_007558_100 Hb_007558_100 Hb_084670_010--Hb_007558_100 Hb_016347_010 Hb_016347_010 Hb_084670_010--Hb_016347_010 Hb_000950_010 Hb_000950_010 Hb_002908_060--Hb_000950_010 Hb_002908_060--Hb_000053_060 Hb_001673_100 Hb_001673_100 Hb_002908_060--Hb_001673_100 Hb_004870_040 Hb_004870_040 Hb_002908_060--Hb_004870_040 Hb_007383_020 Hb_007383_020 Hb_002908_060--Hb_007383_020 Hb_003098_080 Hb_003098_080 Hb_002908_060--Hb_003098_080 Hb_098315_080 Hb_098315_080 Hb_000053_060--Hb_098315_080 Hb_007023_030 Hb_007023_030 Hb_000053_060--Hb_007023_030 Hb_000183_030 Hb_000183_030 Hb_000053_060--Hb_000183_030 Hb_000053_060--Hb_004411_060 Hb_052764_110 Hb_052764_110 Hb_000053_060--Hb_052764_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.883765 1.52186 2.12484 3.77743 1.24045 5.04391
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.3746 3.24156 4.57527 6.66667 5.71277

CAGE analysis