Hb_001673_100

Information

Type -
Description -
Location Contig1673: 135988-139919
Sequence    

Annotation

kegg
ID rcu:RCOM_0421550
description Phosphatidylglycerol/phosphatidylinositol transfer protein precursor, putative
nr
ID XP_012074287.1
description PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Jatropha curcas]
swissprot
ID Q54SW1
description Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 OS=Dictyostelium discoideum GN=DDB_G0282179 PE=3 SV=2
trembl
ID A0A067KIN7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08735 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15453: 136020-140098 , PASA_asmbl_15454: 137280-137585
cDNA
(Sanger)
(ID:Location)		 009_C02.ab1: 136040-140011 , 049_M22.ab1: 136135-140098

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001673_100 0.0 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Jatropha curcas]
2 Hb_002908_060 0.121852944 - - unnamed protein product, partial [Coffea canephora]
3 Hb_002631_130 0.1329959102 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
4 Hb_000548_070 0.1352305165 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
5 Hb_003098_080 0.1367481227 - - -
6 Hb_000950_010 0.1380015692 - - PREDICTED: S-formylglutathione hydrolase [Jatropha curcas]
7 Hb_004870_040 0.1381782316 - - -
8 Hb_003044_080 0.1411661424 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
9 Hb_009615_060 0.1433364281 - - PREDICTED: prolyl endopeptidase-like [Jatropha curcas]
10 Hb_023827_020 0.1440675645 - - beta-1,3-glucanase 1 [Ziziphus jujuba]
11 Hb_000800_090 0.1495031965 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [Jatropha curcas]
12 Hb_010390_010 0.1499627698 - - casein kinase, putative [Ricinus communis]
13 Hb_100147_010 0.1539704881 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
14 Hb_001728_140 0.1540223039 - - -
15 Hb_007383_020 0.1548112425 - - conserved hypothetical protein [Ricinus communis]
16 Hb_028872_150 0.1556705019 - - PREDICTED: uncharacterized protein LOC105137493 [Populus euphratica]
17 Hb_001946_310 0.1573631468 - - PREDICTED: probable ethanolamine kinase isoform X2 [Jatropha curcas]
18 Hb_001318_050 0.1577654221 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
19 Hb_001510_020 0.1595900802 - - Diaminopimelate epimerase, putative [Ricinus communis]
20 Hb_000824_050 0.1642230151 - - PREDICTED: nicotinate phosphoribosyltransferase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001673_100 Hb_001673_100 Hb_002908_060 Hb_002908_060 Hb_001673_100--Hb_002908_060 Hb_002631_130 Hb_002631_130 Hb_001673_100--Hb_002631_130 Hb_000548_070 Hb_000548_070 Hb_001673_100--Hb_000548_070 Hb_003098_080 Hb_003098_080 Hb_001673_100--Hb_003098_080 Hb_000950_010 Hb_000950_010 Hb_001673_100--Hb_000950_010 Hb_004870_040 Hb_004870_040 Hb_001673_100--Hb_004870_040 Hb_002908_060--Hb_000950_010 Hb_000053_060 Hb_000053_060 Hb_002908_060--Hb_000053_060 Hb_002908_060--Hb_004870_040 Hb_007383_020 Hb_007383_020 Hb_002908_060--Hb_007383_020 Hb_002908_060--Hb_003098_080 Hb_009615_060 Hb_009615_060 Hb_002631_130--Hb_009615_060 Hb_000197_190 Hb_000197_190 Hb_002631_130--Hb_000197_190 Hb_000494_030 Hb_000494_030 Hb_002631_130--Hb_000494_030 Hb_000768_160 Hb_000768_160 Hb_002631_130--Hb_000768_160 Hb_000683_050 Hb_000683_050 Hb_002631_130--Hb_000683_050 Hb_002631_130--Hb_000548_070 Hb_001728_140 Hb_001728_140 Hb_000548_070--Hb_001728_140 Hb_000548_070--Hb_009615_060 Hb_003044_080 Hb_003044_080 Hb_000548_070--Hb_003044_080 Hb_001510_020 Hb_001510_020 Hb_000548_070--Hb_001510_020 Hb_000800_090 Hb_000800_090 Hb_000548_070--Hb_000800_090 Hb_000251_030 Hb_000251_030 Hb_000548_070--Hb_000251_030 Hb_001452_210 Hb_001452_210 Hb_003098_080--Hb_001452_210 Hb_001318_050 Hb_001318_050 Hb_003098_080--Hb_001318_050 Hb_002539_020 Hb_002539_020 Hb_003098_080--Hb_002539_020 Hb_003098_080--Hb_007383_020 Hb_006277_010 Hb_006277_010 Hb_000950_010--Hb_006277_010 Hb_000950_010--Hb_003044_080 Hb_000976_100 Hb_000976_100 Hb_000950_010--Hb_000976_100 Hb_004046_030 Hb_004046_030 Hb_000950_010--Hb_004046_030 Hb_000327_160 Hb_000327_160 Hb_000950_010--Hb_000327_160 Hb_022593_010 Hb_022593_010 Hb_004870_040--Hb_022593_010 Hb_000946_110 Hb_000946_110 Hb_004870_040--Hb_000946_110 Hb_023827_020 Hb_023827_020 Hb_004870_040--Hb_023827_020 Hb_009711_050 Hb_009711_050 Hb_004870_040--Hb_009711_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.68389 4.72994 6.71232 29.3485 4.10137 4.82435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.93478 7.43306 15.0508 36.9305 27.6227

CAGE analysis