Hb_009711_050

Information

Type -
Description -
Location Contig9711: 32914-35342
Sequence    

Annotation

kegg
ID pop:POPTR_0019s04500g
description hypothetical protein
nr
ID XP_006371139.1
description hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
swissprot
ID Q9SRT0
description U-box domain-containing protein 9 OS=Arabidopsis thaliana GN=PUB9 PE=1 SV=1
trembl
ID U5FGD0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s04500g PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63960: 34582-35069
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009711_050 0.0 - - hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
2 Hb_004607_070 0.1002210286 - - integral membrane protein, putative [Ricinus communis]
3 Hb_003207_020 0.1174208144 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
4 Hb_000928_190 0.1193792415 - - PREDICTED: putative acyl-activating enzyme 19 isoform X1 [Jatropha curcas]
5 Hb_002611_010 0.1197219064 - - amino acid transporter, putative [Ricinus communis]
6 Hb_033152_070 0.1229701828 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
7 Hb_000613_070 0.1230467167 - - -
8 Hb_004881_030 0.1251258904 - - PREDICTED: uncharacterized protein LOC105629532 isoform X1 [Jatropha curcas]
9 Hb_001104_130 0.1292882152 - - C-14 sterol reductase, putative [Ricinus communis]
10 Hb_012678_020 0.1298022148 - - PREDICTED: outer envelope protein 61 isoform X1 [Jatropha curcas]
11 Hb_012022_050 0.1313309241 - - hypothetical protein EUGRSUZ_B02804 [Eucalyptus grandis]
12 Hb_002804_040 0.1319198038 - - PREDICTED: fasciclin-like arabinogalactan protein 4 [Jatropha curcas]
13 Hb_003052_030 0.1341084892 - - 6-phosphogluconate dehydrogenase family protein isoform 1 [Theobroma cacao]
14 Hb_000946_110 0.1355918138 - - GTP cyclohydrolase I, putative [Ricinus communis]
15 Hb_000297_120 0.1365580311 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
16 Hb_000046_170 0.1373445394 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
17 Hb_010390_010 0.1380754128 - - casein kinase, putative [Ricinus communis]
18 Hb_000525_090 0.1381948631 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
19 Hb_010042_020 0.1388802997 - - UDP-n-acteylglucosamine pyrophosphorylase, putative [Ricinus communis]
20 Hb_000035_390 0.1391836254 - - hypothetical protein CISIN_1g003355mg [Citrus sinensis]

Gene co-expression network

sample Hb_009711_050 Hb_009711_050 Hb_004607_070 Hb_004607_070 Hb_009711_050--Hb_004607_070 Hb_003207_020 Hb_003207_020 Hb_009711_050--Hb_003207_020 Hb_000928_190 Hb_000928_190 Hb_009711_050--Hb_000928_190 Hb_002611_010 Hb_002611_010 Hb_009711_050--Hb_002611_010 Hb_033152_070 Hb_033152_070 Hb_009711_050--Hb_033152_070 Hb_000613_070 Hb_000613_070 Hb_009711_050--Hb_000613_070 Hb_000046_170 Hb_000046_170 Hb_004607_070--Hb_000046_170 Hb_000035_390 Hb_000035_390 Hb_004607_070--Hb_000035_390 Hb_020390_010 Hb_020390_010 Hb_004607_070--Hb_020390_010 Hb_004607_070--Hb_000928_190 Hb_005648_010 Hb_005648_010 Hb_004607_070--Hb_005648_010 Hb_003207_020--Hb_033152_070 Hb_001486_040 Hb_001486_040 Hb_003207_020--Hb_001486_040 Hb_010042_020 Hb_010042_020 Hb_003207_020--Hb_010042_020 Hb_003994_030 Hb_003994_030 Hb_003207_020--Hb_003994_030 Hb_000402_130 Hb_000402_130 Hb_003207_020--Hb_000402_130 Hb_005701_120 Hb_005701_120 Hb_003207_020--Hb_005701_120 Hb_000928_190--Hb_033152_070 Hb_000258_240 Hb_000258_240 Hb_000928_190--Hb_000258_240 Hb_002781_030 Hb_002781_030 Hb_000928_190--Hb_002781_030 Hb_000928_190--Hb_010042_020 Hb_001481_150 Hb_001481_150 Hb_000928_190--Hb_001481_150 Hb_003988_050 Hb_003988_050 Hb_000928_190--Hb_003988_050 Hb_003517_070 Hb_003517_070 Hb_002611_010--Hb_003517_070 Hb_002611_010--Hb_000613_070 Hb_001080_300 Hb_001080_300 Hb_002611_010--Hb_001080_300 Hb_138585_080 Hb_138585_080 Hb_002611_010--Hb_138585_080 Hb_009674_050 Hb_009674_050 Hb_002611_010--Hb_009674_050 Hb_030959_010 Hb_030959_010 Hb_002611_010--Hb_030959_010 Hb_033152_070--Hb_010042_020 Hb_004525_040 Hb_004525_040 Hb_033152_070--Hb_004525_040 Hb_003052_180 Hb_003052_180 Hb_033152_070--Hb_003052_180 Hb_033152_070--Hb_000402_130 Hb_001999_210 Hb_001999_210 Hb_000613_070--Hb_001999_210 Hb_000309_050 Hb_000309_050 Hb_000613_070--Hb_000309_050 Hb_000613_070--Hb_001080_300 Hb_000803_320 Hb_000803_320 Hb_000613_070--Hb_000803_320 Hb_003106_190 Hb_003106_190 Hb_000613_070--Hb_003106_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.244433 0.252004 0.189147 1.2282 0.216717 0.184327
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.39959 0.445341 0.245548 0.774401 0.98411

CAGE analysis