Hb_001999_210

Information

Type -
Description -
Location Contig1999: 208713-213370
Sequence    

Annotation

kegg
ID egr:104422402
description sodium-dependent phosphate transport protein 1, chloroplastic
nr
ID XP_010033022.1
description PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic [Eucalyptus grandis]
swissprot
ID Q9SDI4
description Probable anion transporter 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;1 PE=2 SV=1
trembl
ID A0A059AFE2
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01933 PE=4 SV=1
Gene Ontology
ID GO:0022857
description sodium-dependent phosphate transport protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20041: 211840-211965 , PASA_asmbl_20042: 212538-213150
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001999_210 0.0 - - PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic [Eucalyptus grandis]
2 Hb_005463_110 0.0717716515 - - PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Jatropha curcas]
3 Hb_000613_070 0.071962658 - - -
4 Hb_000186_050 0.0785799393 - - PREDICTED: uncharacterized protein LOC105649281 [Jatropha curcas]
5 Hb_000789_200 0.0887734277 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
6 Hb_003544_160 0.0899543744 - - -
7 Hb_002768_060 0.0905569685 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X1 [Jatropha curcas]
8 Hb_000665_130 0.0979481197 - - PREDICTED: uncharacterized protein LOC105637599 isoform X2 [Jatropha curcas]
9 Hb_002414_050 0.0995115984 - - hypothetical protein CICLE_v10000243mg [Citrus clementina]
10 Hb_003106_190 0.1013579965 - - Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative [Ricinus communis]
11 Hb_001951_220 0.1028228256 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X5 [Jatropha curcas]
12 Hb_001369_750 0.1039847635 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
13 Hb_001662_100 0.1043759313 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
14 Hb_000720_050 0.1090219161 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
15 Hb_002276_020 0.1094502236 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH49 isoform X1 [Jatropha curcas]
16 Hb_000270_390 0.1100861189 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
17 Hb_001951_150 0.1105395996 - - PREDICTED: uncharacterized protein LOC105649758 [Jatropha curcas]
18 Hb_000684_210 0.1126007889 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
19 Hb_000309_050 0.1136052506 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
20 Hb_015934_120 0.1144190785 - - PREDICTED: callose synthase 7 [Vitis vinifera]

Gene co-expression network

sample Hb_001999_210 Hb_001999_210 Hb_005463_110 Hb_005463_110 Hb_001999_210--Hb_005463_110 Hb_000613_070 Hb_000613_070 Hb_001999_210--Hb_000613_070 Hb_000186_050 Hb_000186_050 Hb_001999_210--Hb_000186_050 Hb_000789_200 Hb_000789_200 Hb_001999_210--Hb_000789_200 Hb_003544_160 Hb_003544_160 Hb_001999_210--Hb_003544_160 Hb_002768_060 Hb_002768_060 Hb_001999_210--Hb_002768_060 Hb_005463_110--Hb_003544_160 Hb_002414_050 Hb_002414_050 Hb_005463_110--Hb_002414_050 Hb_001662_100 Hb_001662_100 Hb_005463_110--Hb_001662_100 Hb_001369_750 Hb_001369_750 Hb_005463_110--Hb_001369_750 Hb_018292_010 Hb_018292_010 Hb_005463_110--Hb_018292_010 Hb_000309_050 Hb_000309_050 Hb_000613_070--Hb_000309_050 Hb_002611_010 Hb_002611_010 Hb_000613_070--Hb_002611_010 Hb_001080_300 Hb_001080_300 Hb_000613_070--Hb_001080_300 Hb_000803_320 Hb_000803_320 Hb_000613_070--Hb_000803_320 Hb_003106_190 Hb_003106_190 Hb_000613_070--Hb_003106_190 Hb_000665_130 Hb_000665_130 Hb_000186_050--Hb_000665_130 Hb_001951_220 Hb_001951_220 Hb_000186_050--Hb_001951_220 Hb_000504_180 Hb_000504_180 Hb_000186_050--Hb_000504_180 Hb_000186_050--Hb_002768_060 Hb_000465_280 Hb_000465_280 Hb_000186_050--Hb_000465_280 Hb_027073_020 Hb_027073_020 Hb_000789_200--Hb_027073_020 Hb_000789_200--Hb_002768_060 Hb_000656_010 Hb_000656_010 Hb_000789_200--Hb_000656_010 Hb_004480_100 Hb_004480_100 Hb_000789_200--Hb_004480_100 Hb_000720_050 Hb_000720_050 Hb_000789_200--Hb_000720_050 Hb_001789_110 Hb_001789_110 Hb_000789_200--Hb_001789_110 Hb_003544_160--Hb_002414_050 Hb_004679_030 Hb_004679_030 Hb_003544_160--Hb_004679_030 Hb_003544_160--Hb_002768_060 Hb_003544_160--Hb_001662_100 Hb_001876_010 Hb_001876_010 Hb_003544_160--Hb_001876_010 Hb_000359_210 Hb_000359_210 Hb_003544_160--Hb_000359_210 Hb_002768_060--Hb_001876_010 Hb_002768_060--Hb_004480_100 Hb_002908_050 Hb_002908_050 Hb_002768_060--Hb_002908_050 Hb_002768_060--Hb_004679_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.56963 1.89798 0.961764 3.09601 1.23789 2.02413
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.7669 1.59618 1.40915 2.41474 4.52376

CAGE analysis