Hb_000035_390

Information

Type -
Description -
Location Contig35: 385454-399076
Sequence    

Annotation

kegg
ID rcu:RCOM_0920360
description dynamin, putative
nr
ID KDO44154.1
description hypothetical protein CISIN_1g003355mg [Citrus sinensis]
swissprot
ID Q8S944
description Dynamin-related protein 3A OS=Arabidopsis thaliana GN=DRP3A PE=1 SV=2
trembl
ID A0A067DMD4
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003355mg PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36445: 385632-386347 , PASA_asmbl_36446: 386402-389359 , PASA_asmbl_36447: 389362-396456
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_390 0.0 - - hypothetical protein CISIN_1g003355mg [Citrus sinensis]
2 Hb_132880_040 0.0715414771 - - PREDICTED: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X2 [Jatropha curcas]
3 Hb_005648_010 0.0801774091 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]
4 Hb_000185_220 0.0828637665 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
5 Hb_004607_070 0.0847157147 - - integral membrane protein, putative [Ricinus communis]
6 Hb_000046_170 0.088336709 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
7 Hb_000367_090 0.0884114599 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
8 Hb_006059_010 0.0916200086 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
9 Hb_028487_160 0.0917682493 - - clathrin assembly protein, putative [Ricinus communis]
10 Hb_002357_060 0.0926784057 - - hypothetical protein CICLE_v10006112mg [Citrus clementina]
11 Hb_000535_050 0.0934631023 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Jatropha curcas]
12 Hb_000309_050 0.0959635644 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
13 Hb_000800_090 0.0972752855 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [Jatropha curcas]
14 Hb_009615_060 0.1008127173 - - PREDICTED: prolyl endopeptidase-like [Jatropha curcas]
15 Hb_001493_150 0.1022390815 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
16 Hb_016347_010 0.1025580018 - - protein transporter, putative [Ricinus communis]
17 Hb_002477_290 0.1035730092 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
18 Hb_000025_190 0.1043389828 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
19 Hb_000251_030 0.1043908148 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
20 Hb_001221_020 0.1052718279 - - PREDICTED: probable aspartyl aminopeptidase [Jatropha curcas]

Gene co-expression network

sample Hb_000035_390 Hb_000035_390 Hb_132880_040 Hb_132880_040 Hb_000035_390--Hb_132880_040 Hb_005648_010 Hb_005648_010 Hb_000035_390--Hb_005648_010 Hb_000185_220 Hb_000185_220 Hb_000035_390--Hb_000185_220 Hb_004607_070 Hb_004607_070 Hb_000035_390--Hb_004607_070 Hb_000046_170 Hb_000046_170 Hb_000035_390--Hb_000046_170 Hb_000367_090 Hb_000367_090 Hb_000035_390--Hb_000367_090 Hb_001157_200 Hb_001157_200 Hb_132880_040--Hb_001157_200 Hb_004677_050 Hb_004677_050 Hb_132880_040--Hb_004677_050 Hb_132880_040--Hb_000046_170 Hb_000984_170 Hb_000984_170 Hb_132880_040--Hb_000984_170 Hb_006452_120 Hb_006452_120 Hb_132880_040--Hb_006452_120 Hb_002093_060 Hb_002093_060 Hb_005648_010--Hb_002093_060 Hb_002357_060 Hb_002357_060 Hb_005648_010--Hb_002357_060 Hb_004880_150 Hb_004880_150 Hb_005648_010--Hb_004880_150 Hb_000115_150 Hb_000115_150 Hb_005648_010--Hb_000115_150 Hb_000025_190 Hb_000025_190 Hb_005648_010--Hb_000025_190 Hb_000120_370 Hb_000120_370 Hb_005648_010--Hb_000120_370 Hb_006059_010 Hb_006059_010 Hb_000185_220--Hb_006059_010 Hb_001195_400 Hb_001195_400 Hb_000185_220--Hb_001195_400 Hb_003206_110 Hb_003206_110 Hb_000185_220--Hb_003206_110 Hb_001080_300 Hb_001080_300 Hb_000185_220--Hb_001080_300 Hb_000309_050 Hb_000309_050 Hb_000185_220--Hb_000309_050 Hb_001975_150 Hb_001975_150 Hb_000185_220--Hb_001975_150 Hb_004607_070--Hb_000046_170 Hb_020390_010 Hb_020390_010 Hb_004607_070--Hb_020390_010 Hb_000928_190 Hb_000928_190 Hb_004607_070--Hb_000928_190 Hb_004607_070--Hb_005648_010 Hb_009711_050 Hb_009711_050 Hb_004607_070--Hb_009711_050 Hb_000046_170--Hb_000367_090 Hb_000179_270 Hb_000179_270 Hb_000046_170--Hb_000179_270 Hb_028487_160 Hb_028487_160 Hb_000046_170--Hb_028487_160 Hb_000087_070 Hb_000087_070 Hb_000046_170--Hb_000087_070 Hb_000165_080 Hb_000165_080 Hb_000046_170--Hb_000165_080 Hb_000367_090--Hb_028487_160 Hb_000227_160 Hb_000227_160 Hb_000367_090--Hb_000227_160 Hb_000367_090--Hb_002357_060 Hb_004705_170 Hb_004705_170 Hb_000367_090--Hb_004705_170 Hb_189216_010 Hb_189216_010 Hb_000367_090--Hb_189216_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.35993 3.81407 3.21468 7.35221 2.0306 1.77156
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.34249 3.41678 3.18682 7.00639 6.45369

CAGE analysis