Hb_002539_020

Information

Type -
Description -
Location Contig2539: 17663-21509
Sequence    

Annotation

kegg
ID pvu:PHAVU_003G042300g
description hypothetical protein
nr
ID KDO70374.1
description hypothetical protein CISIN_1g007216mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067FSL1
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007216mg PE=4 SV=1
Gene Ontology
ID GO:0003993
description probable inactive purple acid phosphatase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26504: 2649-19378 , PASA_asmbl_26505: 20398-21749 , PASA_asmbl_26506: 20180-21144
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002539_020 0.0 - - hypothetical protein CISIN_1g007216mg [Citrus sinensis]
2 Hb_002539_010 0.1235625566 - - hypothetical protein JCGZ_15711 [Jatropha curcas]
3 Hb_006846_120 0.125111568 - - Succinate/fumarate mitochondrial transporter, putative [Ricinus communis]
4 Hb_008226_070 0.1323859436 - - PREDICTED: expansin-A8 [Jatropha curcas]
5 Hb_007423_020 0.1362370885 - - 2-nitropropane dioxygenase precursor, putative [Ricinus communis]
6 Hb_100147_010 0.1462258566 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
7 Hb_000094_370 0.153026137 - - -
8 Hb_003098_080 0.1531260598 - - -
9 Hb_001731_030 0.1535449997 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A-like [Gossypium raimondii]
10 Hb_003226_120 0.1536379995 - - conserved hypothetical protein [Ricinus communis]
11 Hb_012545_090 0.1560424819 - - hypothetical protein JCGZ_04320 [Jatropha curcas]
12 Hb_000159_120 0.1575977244 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
13 Hb_000808_170 0.1586032872 - - protein disulfide isomerase, putative [Ricinus communis]
14 Hb_000625_030 0.1602323262 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
15 Hb_001500_070 0.1604746574 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000181_020 0.1634731851 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like [Jatropha curcas]
17 Hb_000012_410 0.1670399692 - - PREDICTED: histone deacetylase 2 isoform X1 [Jatropha curcas]
18 Hb_001510_020 0.1726782772 - - Diaminopimelate epimerase, putative [Ricinus communis]
19 Hb_073171_100 0.1751022907 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
20 Hb_001318_050 0.1759282437 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]

Gene co-expression network

sample Hb_002539_020 Hb_002539_020 Hb_002539_010 Hb_002539_010 Hb_002539_020--Hb_002539_010 Hb_006846_120 Hb_006846_120 Hb_002539_020--Hb_006846_120 Hb_008226_070 Hb_008226_070 Hb_002539_020--Hb_008226_070 Hb_007423_020 Hb_007423_020 Hb_002539_020--Hb_007423_020 Hb_100147_010 Hb_100147_010 Hb_002539_020--Hb_100147_010 Hb_000094_370 Hb_000094_370 Hb_002539_020--Hb_000094_370 Hb_011633_040 Hb_011633_040 Hb_002539_010--Hb_011633_040 Hb_000337_010 Hb_000337_010 Hb_002539_010--Hb_000337_010 Hb_000625_030 Hb_000625_030 Hb_002539_010--Hb_000625_030 Hb_001500_070 Hb_001500_070 Hb_002539_010--Hb_001500_070 Hb_002539_010--Hb_008226_070 Hb_000808_170 Hb_000808_170 Hb_006846_120--Hb_000808_170 Hb_001731_030 Hb_001731_030 Hb_006846_120--Hb_001731_030 Hb_000181_020 Hb_000181_020 Hb_006846_120--Hb_000181_020 Hb_006846_120--Hb_000625_030 Hb_006846_120--Hb_007423_020 Hb_000159_120 Hb_000159_120 Hb_008226_070--Hb_000159_120 Hb_012022_080 Hb_012022_080 Hb_008226_070--Hb_012022_080 Hb_012760_040 Hb_012760_040 Hb_008226_070--Hb_012760_040 Hb_003226_120 Hb_003226_120 Hb_008226_070--Hb_003226_120 Hb_000190_090 Hb_000190_090 Hb_008226_070--Hb_000190_090 Hb_001221_020 Hb_001221_020 Hb_008226_070--Hb_001221_020 Hb_007423_020--Hb_000808_170 Hb_007423_020--Hb_000625_030 Hb_007423_020--Hb_000181_020 Hb_007423_020--Hb_002539_010 Hb_000251_030 Hb_000251_030 Hb_100147_010--Hb_000251_030 Hb_000381_110 Hb_000381_110 Hb_100147_010--Hb_000381_110 Hb_029385_010 Hb_029385_010 Hb_100147_010--Hb_029385_010 Hb_001971_060 Hb_001971_060 Hb_100147_010--Hb_001971_060 Hb_001510_020 Hb_001510_020 Hb_100147_010--Hb_001510_020 Hb_001623_160 Hb_001623_160 Hb_100147_010--Hb_001623_160 Hb_000684_360 Hb_000684_360 Hb_000094_370--Hb_000684_360 Hb_012325_010 Hb_012325_010 Hb_000094_370--Hb_012325_010 Hb_025336_020 Hb_025336_020 Hb_000094_370--Hb_025336_020 Hb_003626_040 Hb_003626_040 Hb_000094_370--Hb_003626_040 Hb_000094_370--Hb_001500_070 Hb_001019_050 Hb_001019_050 Hb_000094_370--Hb_001019_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.857507 2.37372 2.53592 5.5707 0.651531 1.17116
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.17065 3.32662 1.62348 14.596 4.64962

CAGE analysis