Hb_003626_040

Information

Type -
Description -
Location Contig3626: 21855-28174
Sequence    

Annotation

kegg
ID pop:POPTR_0018s094001
description POPTRDRAFT_578533; hypothetical protein
nr
ID XP_012076888.1
description PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X2 [Jatropha curcas]
swissprot
ID F4IY03
description Probable 2-oxoglutarate-dependent dioxygenase At3g49630 OS=Arabidopsis thaliana GN=At3g49630 PE=3 SV=1
trembl
ID A0A067KPS7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07380 PE=3 SV=1
Gene Ontology
ID GO:0016706
description probable 2-oxoglutarate-dependent dioxygenase at3g49630 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37241: 22617-24805 , PASA_asmbl_37242: 24817-28202
cDNA
(Sanger)
(ID:Location)		 029_M01.ab1: 22617-23185

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003626_040 0.0 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X2 [Jatropha curcas]
2 Hb_000347_110 0.111991104 - - BnaA05g25330D [Brassica napus]
3 Hb_006717_070 0.112040133 transcription factor TF Family: MYB-related PREDICTED: transcription factor CPC-like [Jatropha curcas]
4 Hb_000702_060 0.1227809992 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003813_120 0.1248202382 - - zinc finger protein, putative [Ricinus communis]
6 Hb_000684_360 0.1249845257 transcription factor TF Family: AP2 hypothetical protein JCGZ_16454 [Jatropha curcas]
7 Hb_001500_070 0.1337038437 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000823_010 0.1355436536 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
9 Hb_004041_100 0.1364620915 - - -
10 Hb_000227_330 0.1368724194 - - Acyl-CoA synthetase [Ricinus communis]
11 Hb_001322_180 0.138935933 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
12 Hb_000094_370 0.1426789844 - - -
13 Hb_001195_020 0.1469191376 - - PREDICTED: ornithine carbamoyltransferase, chloroplastic [Jatropha curcas]
14 Hb_053575_020 0.1470450206 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
15 Hb_001159_020 0.1507048516 - - -
16 Hb_003626_050 0.1528851531 - - malic enzyme, putative [Ricinus communis]
17 Hb_000157_070 0.1530752412 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]
18 Hb_009732_020 0.1537816817 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
19 Hb_000834_230 0.154459432 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
20 Hb_012325_010 0.1549062206 - - hypothetical protein RCOM_0068670 [Ricinus communis]

Gene co-expression network

sample Hb_003626_040 Hb_003626_040 Hb_000347_110 Hb_000347_110 Hb_003626_040--Hb_000347_110 Hb_006717_070 Hb_006717_070 Hb_003626_040--Hb_006717_070 Hb_000702_060 Hb_000702_060 Hb_003626_040--Hb_000702_060 Hb_003813_120 Hb_003813_120 Hb_003626_040--Hb_003813_120 Hb_000684_360 Hb_000684_360 Hb_003626_040--Hb_000684_360 Hb_001500_070 Hb_001500_070 Hb_003626_040--Hb_001500_070 Hb_000347_110--Hb_003813_120 Hb_000173_260 Hb_000173_260 Hb_000347_110--Hb_000173_260 Hb_004041_100 Hb_004041_100 Hb_000347_110--Hb_004041_100 Hb_011360_060 Hb_011360_060 Hb_000347_110--Hb_011360_060 Hb_000181_020 Hb_000181_020 Hb_000347_110--Hb_000181_020 Hb_127886_010 Hb_127886_010 Hb_006717_070--Hb_127886_010 Hb_009732_020 Hb_009732_020 Hb_006717_070--Hb_009732_020 Hb_000395_220 Hb_000395_220 Hb_006717_070--Hb_000395_220 Hb_000362_110 Hb_000362_110 Hb_006717_070--Hb_000362_110 Hb_006717_070--Hb_003813_120 Hb_000702_060--Hb_000684_360 Hb_053575_020 Hb_053575_020 Hb_000702_060--Hb_053575_020 Hb_000337_010 Hb_000337_010 Hb_000702_060--Hb_000337_010 Hb_000702_060--Hb_000347_110 Hb_001780_150 Hb_001780_150 Hb_000702_060--Hb_001780_150 Hb_005181_180 Hb_005181_180 Hb_000702_060--Hb_005181_180 Hb_000227_040 Hb_000227_040 Hb_003813_120--Hb_000227_040 Hb_003813_120--Hb_000702_060 Hb_003813_120--Hb_001500_070 Hb_003125_180 Hb_003125_180 Hb_000684_360--Hb_003125_180 Hb_000684_360--Hb_053575_020 Hb_169051_010 Hb_169051_010 Hb_000684_360--Hb_169051_010 Hb_000157_070 Hb_000157_070 Hb_000684_360--Hb_000157_070 Hb_029879_120 Hb_029879_120 Hb_000684_360--Hb_029879_120 Hb_003626_050 Hb_003626_050 Hb_001500_070--Hb_003626_050 Hb_001500_070--Hb_004041_100 Hb_002213_090 Hb_002213_090 Hb_001500_070--Hb_002213_090 Hb_000625_030 Hb_000625_030 Hb_001500_070--Hb_000625_030 Hb_001500_070--Hb_000347_110 Hb_012325_010 Hb_012325_010 Hb_001500_070--Hb_012325_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.468155 2.73433 1.54453 1.77844 0.730342 0.76526
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.475714 0.978747 0.16133 5.63038 1.79549

CAGE analysis