Hb_000181_020

Information

Type -
Description -
Location Contig181: 5611-8733
Sequence    

Annotation

kegg
ID rcu:RCOM_0651450
description D-alanine aminotransferase, putative (EC:2.6.1.21)
nr
ID XP_012076275.1
description PREDICTED: D-amino-acid transaminase, chloroplastic-like [Jatropha curcas]
swissprot
ID Q8L493
description D-amino-acid transaminase, chloroplastic OS=Arabidopsis thaliana GN=DAAT PE=1 SV=1
trembl
ID A0A067LN33
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15303 PE=3 SV=1
Gene Ontology
ID GO:0003824
description d-amino-acid chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17483: 5607-6262 , PASA_asmbl_17484: 6328-6588 , PASA_asmbl_17485: 6810-7032 , PASA_asmbl_17486: 8350-8647
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000181_020 0.0 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like [Jatropha curcas]
2 Hb_004041_100 0.1042843103 - - -
3 Hb_000625_030 0.1111544713 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
4 Hb_000347_110 0.1119438343 - - BnaA05g25330D [Brassica napus]
5 Hb_011360_060 0.1215841099 - - glycogen phosphorylase, putative [Ricinus communis]
6 Hb_006846_120 0.1329921949 - - Succinate/fumarate mitochondrial transporter, putative [Ricinus communis]
7 Hb_001500_070 0.1351748997 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000173_260 0.1405780246 - - hypothetical protein L484_010046 [Morus notabilis]
9 Hb_000041_060 0.144108201 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
10 Hb_003813_120 0.1474386729 - - zinc finger protein, putative [Ricinus communis]
11 Hb_000094_370 0.1552315365 - - -
12 Hb_000808_170 0.1564454457 - - protein disulfide isomerase, putative [Ricinus communis]
13 Hb_000684_360 0.1578730997 transcription factor TF Family: AP2 hypothetical protein JCGZ_16454 [Jatropha curcas]
14 Hb_000227_330 0.1594466811 - - Acyl-CoA synthetase [Ricinus communis]
15 Hb_007423_020 0.1609322397 - - 2-nitropropane dioxygenase precursor, putative [Ricinus communis]
16 Hb_008749_020 0.162430198 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002539_020 0.1634731851 - - hypothetical protein CISIN_1g007216mg [Citrus sinensis]
18 Hb_000343_100 0.1648981042 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
19 Hb_003626_040 0.1654299388 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X2 [Jatropha curcas]
20 Hb_000337_010 0.1657849369 - - PREDICTED: proteasome activator subunit 4 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000181_020 Hb_000181_020 Hb_004041_100 Hb_004041_100 Hb_000181_020--Hb_004041_100 Hb_000625_030 Hb_000625_030 Hb_000181_020--Hb_000625_030 Hb_000347_110 Hb_000347_110 Hb_000181_020--Hb_000347_110 Hb_011360_060 Hb_011360_060 Hb_000181_020--Hb_011360_060 Hb_006846_120 Hb_006846_120 Hb_000181_020--Hb_006846_120 Hb_001500_070 Hb_001500_070 Hb_000181_020--Hb_001500_070 Hb_004041_100--Hb_000347_110 Hb_004041_100--Hb_000625_030 Hb_000173_260 Hb_000173_260 Hb_004041_100--Hb_000173_260 Hb_008749_020 Hb_008749_020 Hb_004041_100--Hb_008749_020 Hb_004041_100--Hb_001500_070 Hb_000625_030--Hb_008749_020 Hb_000625_030--Hb_001500_070 Hb_001040_150 Hb_001040_150 Hb_000625_030--Hb_001040_150 Hb_000720_090 Hb_000720_090 Hb_000625_030--Hb_000720_090 Hb_003813_120 Hb_003813_120 Hb_000347_110--Hb_003813_120 Hb_000347_110--Hb_000173_260 Hb_000347_110--Hb_011360_060 Hb_003626_040 Hb_003626_040 Hb_000347_110--Hb_003626_040 Hb_011360_060--Hb_000173_260 Hb_002026_070 Hb_002026_070 Hb_011360_060--Hb_002026_070 Hb_000041_060 Hb_000041_060 Hb_011360_060--Hb_000041_060 Hb_011360_060--Hb_000625_030 Hb_000808_170 Hb_000808_170 Hb_006846_120--Hb_000808_170 Hb_002539_020 Hb_002539_020 Hb_006846_120--Hb_002539_020 Hb_001731_030 Hb_001731_030 Hb_006846_120--Hb_001731_030 Hb_006846_120--Hb_000625_030 Hb_007423_020 Hb_007423_020 Hb_006846_120--Hb_007423_020 Hb_003626_050 Hb_003626_050 Hb_001500_070--Hb_003626_050 Hb_002213_090 Hb_002213_090 Hb_001500_070--Hb_002213_090 Hb_001500_070--Hb_000347_110 Hb_012325_010 Hb_012325_010 Hb_001500_070--Hb_012325_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.650929 3.36331 2.80864 3.45043 1.15656 1.44515
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.41363 1.24157 0.73204 15.4101 6.57218

CAGE analysis