Hb_000808_170

Information

Type -
Description -
Location Contig808: 176364-181460
Sequence    

Annotation

kegg
ID rcu:RCOM_1434600
description protein disulfide isomerase, putative (EC:5.3.4.1)
nr
ID XP_002512495.1
description protein disulfide isomerase, putative [Ricinus communis]
swissprot
ID P38661
description Probable protein disulfide-isomerase A6 OS=Medicago sativa PE=2 SV=1
trembl
ID B9RFH6
description Protein disulfide isomerase, putative OS=Ricinus communis GN=RCOM_1434600 PE=3 SV=1
Gene Ontology
ID GO:0044464
description probable protein disulfide-isomerase a6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59093: 181428-181763
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000808_170 0.0 - - protein disulfide isomerase, putative [Ricinus communis]
2 Hb_001731_030 0.0932696817 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A-like [Gossypium raimondii]
3 Hb_006846_120 0.1082461596 - - Succinate/fumarate mitochondrial transporter, putative [Ricinus communis]
4 Hb_000041_060 0.1276549756 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
5 Hb_000317_350 0.1284065585 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
6 Hb_003207_010 0.1292203874 - - PREDICTED: phospholipase D beta 1-like [Jatropha curcas]
7 Hb_073171_100 0.1358745749 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
8 Hb_007423_020 0.1380171463 - - 2-nitropropane dioxygenase precursor, putative [Ricinus communis]
9 Hb_001269_650 0.1392386397 - - transporter, putative [Ricinus communis]
10 Hb_028960_030 0.141495781 - - Short-chain dehydrogenase-reductase B [Theobroma cacao]
11 Hb_001168_050 0.1451193937 - - hypothetical protein POPTR_0007s03190g [Populus trichocarpa]
12 Hb_011909_010 0.1469706376 - - PREDICTED: uncharacterized protein LOC100246941 [Vitis vinifera]
13 Hb_002005_100 0.1480554683 - - -
14 Hb_000190_090 0.1489291407 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
15 Hb_001500_070 0.1493798387 - - conserved hypothetical protein [Ricinus communis]
16 Hb_011224_160 0.1534425246 transcription factor, rubber biosynthesis TF Family: HSF, Gene Name: Farnesyl diphosphate synthase PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
17 Hb_000209_100 0.1545428674 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X2 [Jatropha curcas]
18 Hb_006916_110 0.1552409211 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
19 Hb_000181_020 0.1564454457 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like [Jatropha curcas]
20 Hb_082741_010 0.156931461 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]

Gene co-expression network

sample Hb_000808_170 Hb_000808_170 Hb_001731_030 Hb_001731_030 Hb_000808_170--Hb_001731_030 Hb_006846_120 Hb_006846_120 Hb_000808_170--Hb_006846_120 Hb_000041_060 Hb_000041_060 Hb_000808_170--Hb_000041_060 Hb_000317_350 Hb_000317_350 Hb_000808_170--Hb_000317_350 Hb_003207_010 Hb_003207_010 Hb_000808_170--Hb_003207_010 Hb_073171_100 Hb_073171_100 Hb_000808_170--Hb_073171_100 Hb_001493_150 Hb_001493_150 Hb_001731_030--Hb_001493_150 Hb_028960_030 Hb_028960_030 Hb_001731_030--Hb_028960_030 Hb_001731_030--Hb_073171_100 Hb_000159_120 Hb_000159_120 Hb_001731_030--Hb_000159_120 Hb_011224_160 Hb_011224_160 Hb_001731_030--Hb_011224_160 Hb_002539_020 Hb_002539_020 Hb_006846_120--Hb_002539_020 Hb_006846_120--Hb_001731_030 Hb_000181_020 Hb_000181_020 Hb_006846_120--Hb_000181_020 Hb_000625_030 Hb_000625_030 Hb_006846_120--Hb_000625_030 Hb_007423_020 Hb_007423_020 Hb_006846_120--Hb_007423_020 Hb_001369_230 Hb_001369_230 Hb_000041_060--Hb_001369_230 Hb_001500_070 Hb_001500_070 Hb_000041_060--Hb_001500_070 Hb_003626_050 Hb_003626_050 Hb_000041_060--Hb_003626_050 Hb_000347_110 Hb_000347_110 Hb_000041_060--Hb_000347_110 Hb_004129_050 Hb_004129_050 Hb_000041_060--Hb_004129_050 Hb_000317_350--Hb_028960_030 Hb_000049_250 Hb_000049_250 Hb_000317_350--Hb_000049_250 Hb_005333_050 Hb_005333_050 Hb_000317_350--Hb_005333_050 Hb_000321_090 Hb_000321_090 Hb_000317_350--Hb_000321_090 Hb_000009_030 Hb_000009_030 Hb_000317_350--Hb_000009_030 Hb_020805_180 Hb_020805_180 Hb_000317_350--Hb_020805_180 Hb_094970_010 Hb_094970_010 Hb_003207_010--Hb_094970_010 Hb_003207_010--Hb_001731_030 Hb_005015_110 Hb_005015_110 Hb_003207_010--Hb_005015_110 Hb_003207_010--Hb_001493_150 Hb_000139_340 Hb_000139_340 Hb_003207_010--Hb_000139_340 Hb_006501_160 Hb_006501_160 Hb_073171_100--Hb_006501_160 Hb_000347_450 Hb_000347_450 Hb_073171_100--Hb_000347_450 Hb_073171_100--Hb_011224_160 Hb_001019_050 Hb_001019_050 Hb_073171_100--Hb_001019_050 Hb_016347_010 Hb_016347_010 Hb_073171_100--Hb_016347_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.417403 1.04636 1.18481 0.693075 0.281317 0.563041
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.07474 0.757992 0.707657 3.7088 1.75681

CAGE analysis