Hb_001369_230

Information

Type -
Description -
Location Contig1369: 255865-258606
Sequence    

Annotation

kegg
ID rcu:RCOM_1500690
description ubiquitin-protein ligase, putative
nr
ID XP_012090454.1
description PREDICTED: F-box protein At5g07670 [Jatropha curcas]
swissprot
ID Q8VYT5
description F-box protein At5g07670 OS=Arabidopsis thaliana GN=At5g07670 PE=2 SV=1
trembl
ID A0A067JEV5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26267 PE=4 SV=1
Gene Ontology
ID GO:0016874
description f-box protein at5g07670-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10163: 257416-258241
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_230 0.0 - - PREDICTED: F-box protein At5g07670 [Jatropha curcas]
2 Hb_000317_350 0.1178679141 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
3 Hb_003266_020 0.1264881378 - - PREDICTED: protein trichome birefringence-like 11 [Jatropha curcas]
4 Hb_009732_020 0.12698956 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
5 Hb_005883_110 0.1307556015 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
6 Hb_000559_070 0.1312765776 - - calcineurin B, putative [Ricinus communis]
7 Hb_000041_060 0.1329959467 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
8 Hb_003626_050 0.1341741869 - - malic enzyme, putative [Ricinus communis]
9 Hb_001322_180 0.1357908643 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
10 Hb_000009_120 0.1380976768 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
11 Hb_000022_150 0.1381974319 - - -
12 Hb_000022_170 0.1420594832 - - PREDICTED: uncharacterized protein LOC105628473 [Jatropha curcas]
13 Hb_000049_250 0.1436219971 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
14 Hb_000455_130 0.1445663483 - - PREDICTED: aspartic proteinase A1-like isoform X1 [Jatropha curcas]
15 Hb_001123_220 0.1465591835 - - -
16 Hb_005333_050 0.1471934398 - - PREDICTED: glucose-6-phosphate isomerase 1, chloroplastic [Jatropha curcas]
17 Hb_004218_250 0.1490199393 - - PREDICTED: beta-galactosidase [Jatropha curcas]
18 Hb_000742_170 0.1492464859 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_006829_100 0.1495359387 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000035_010 0.1500514537 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR12-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001369_230 Hb_001369_230 Hb_000317_350 Hb_000317_350 Hb_001369_230--Hb_000317_350 Hb_003266_020 Hb_003266_020 Hb_001369_230--Hb_003266_020 Hb_009732_020 Hb_009732_020 Hb_001369_230--Hb_009732_020 Hb_005883_110 Hb_005883_110 Hb_001369_230--Hb_005883_110 Hb_000559_070 Hb_000559_070 Hb_001369_230--Hb_000559_070 Hb_000041_060 Hb_000041_060 Hb_001369_230--Hb_000041_060 Hb_028960_030 Hb_028960_030 Hb_000317_350--Hb_028960_030 Hb_000049_250 Hb_000049_250 Hb_000317_350--Hb_000049_250 Hb_005333_050 Hb_005333_050 Hb_000317_350--Hb_005333_050 Hb_000321_090 Hb_000321_090 Hb_000317_350--Hb_000321_090 Hb_000009_030 Hb_000009_030 Hb_000317_350--Hb_000009_030 Hb_020805_180 Hb_020805_180 Hb_000317_350--Hb_020805_180 Hb_002968_070 Hb_002968_070 Hb_003266_020--Hb_002968_070 Hb_003266_020--Hb_005883_110 Hb_001953_120 Hb_001953_120 Hb_003266_020--Hb_001953_120 Hb_012940_040 Hb_012940_040 Hb_003266_020--Hb_012940_040 Hb_015183_100 Hb_015183_100 Hb_003266_020--Hb_015183_100 Hb_088144_020 Hb_088144_020 Hb_003266_020--Hb_088144_020 Hb_000395_220 Hb_000395_220 Hb_009732_020--Hb_000395_220 Hb_000227_040 Hb_000227_040 Hb_009732_020--Hb_000227_040 Hb_003906_170 Hb_003906_170 Hb_009732_020--Hb_003906_170 Hb_006717_070 Hb_006717_070 Hb_009732_020--Hb_006717_070 Hb_009732_020--Hb_005333_050 Hb_003849_240 Hb_003849_240 Hb_009732_020--Hb_003849_240 Hb_000109_260 Hb_000109_260 Hb_005883_110--Hb_000109_260 Hb_000976_110 Hb_000976_110 Hb_005883_110--Hb_000976_110 Hb_000318_150 Hb_000318_150 Hb_005883_110--Hb_000318_150 Hb_003490_060 Hb_003490_060 Hb_005883_110--Hb_003490_060 Hb_027402_130 Hb_027402_130 Hb_005883_110--Hb_027402_130 Hb_000559_070--Hb_003266_020 Hb_000559_070--Hb_005883_110 Hb_000455_130 Hb_000455_130 Hb_000559_070--Hb_000455_130 Hb_001123_220 Hb_001123_220 Hb_000559_070--Hb_001123_220 Hb_098315_090 Hb_098315_090 Hb_000559_070--Hb_098315_090 Hb_000808_170 Hb_000808_170 Hb_000041_060--Hb_000808_170 Hb_001500_070 Hb_001500_070 Hb_000041_060--Hb_001500_070 Hb_003626_050 Hb_003626_050 Hb_000041_060--Hb_003626_050 Hb_000347_110 Hb_000347_110 Hb_000041_060--Hb_000347_110 Hb_004129_050 Hb_004129_050 Hb_000041_060--Hb_004129_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.13668 3.38778 2.88048 1.367 1.22973 1.47395
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.64115 0.626648 0.754932 7.26449 3.24466

CAGE analysis