Hb_005883_110

Information

Type transcription factor
Description TF Family: bHLH
Location Contig5883: 88630-92153
Sequence    

Annotation

kegg
ID cit:102623252
description transcription factor bHLH79-like
nr
ID XP_012075467.1
description PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
swissprot
ID Q9LV17
description Transcription factor bHLH79 OS=Arabidopsis thaliana GN=BHLH79 PE=2 SV=1
trembl
ID A0A067KJA7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10940 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor bhlh79-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50048: 88680-91343 , PASA_asmbl_50049: 90736-91620 , PASA_asmbl_50050: 91634-92000
cDNA
(Sanger)
(ID:Location)		 050_M18.ab1: 91018-91343

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005883_110 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
2 Hb_000109_260 0.0999535157 - - PREDICTED: WAT1-related protein At3g28050-like isoform X1 [Jatropha curcas]
3 Hb_003266_020 0.1005664712 - - PREDICTED: protein trichome birefringence-like 11 [Jatropha curcas]
4 Hb_000976_110 0.1042045879 - - PREDICTED: KRR1 small subunit processome component homolog [Jatropha curcas]
5 Hb_000318_150 0.108442306 - - RNA-binding protein Nova-1, putative [Ricinus communis]
6 Hb_003490_060 0.1137760207 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2 [Sesamum indicum]
7 Hb_027402_130 0.1147621003 - - malate dehydrogenase, putative [Ricinus communis]
8 Hb_084994_010 0.1157328888 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Jatropha curcas]
9 Hb_000455_130 0.1178869123 - - PREDICTED: aspartic proteinase A1-like isoform X1 [Jatropha curcas]
10 Hb_000985_050 0.1184921159 - - PREDICTED: uncharacterized protein LOC105647985 isoform X1 [Jatropha curcas]
11 Hb_011674_040 0.119230539 - - PREDICTED: uncharacterized protein LOC105648163 isoform X1 [Jatropha curcas]
12 Hb_000009_030 0.1194287619 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
13 Hb_001999_140 0.1203564101 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_003636_080 0.1209309348 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
15 Hb_000101_390 0.1210481136 - - PREDICTED: mucin-5B [Jatropha curcas]
16 Hb_163256_010 0.1215877451 - - PREDICTED: phosphoglucomutase, chloroplastic [Jatropha curcas]
17 Hb_001221_180 0.1216857534 - - calcineurin-like phosphoesterase [Manihot esculenta]
18 Hb_004162_220 0.1221436708 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
19 Hb_160608_010 0.1244218899 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
20 Hb_001307_240 0.1255311576 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005883_110 Hb_005883_110 Hb_000109_260 Hb_000109_260 Hb_005883_110--Hb_000109_260 Hb_003266_020 Hb_003266_020 Hb_005883_110--Hb_003266_020 Hb_000976_110 Hb_000976_110 Hb_005883_110--Hb_000976_110 Hb_000318_150 Hb_000318_150 Hb_005883_110--Hb_000318_150 Hb_003490_060 Hb_003490_060 Hb_005883_110--Hb_003490_060 Hb_027402_130 Hb_027402_130 Hb_005883_110--Hb_027402_130 Hb_000109_260--Hb_000976_110 Hb_000109_260--Hb_003490_060 Hb_003680_020 Hb_003680_020 Hb_000109_260--Hb_003680_020 Hb_011674_040 Hb_011674_040 Hb_000109_260--Hb_011674_040 Hb_000009_030 Hb_000009_030 Hb_000109_260--Hb_000009_030 Hb_003490_050 Hb_003490_050 Hb_000109_260--Hb_003490_050 Hb_002968_070 Hb_002968_070 Hb_003266_020--Hb_002968_070 Hb_001953_120 Hb_001953_120 Hb_003266_020--Hb_001953_120 Hb_012940_040 Hb_012940_040 Hb_003266_020--Hb_012940_040 Hb_015183_100 Hb_015183_100 Hb_003266_020--Hb_015183_100 Hb_088144_020 Hb_088144_020 Hb_003266_020--Hb_088144_020 Hb_000976_110--Hb_011674_040 Hb_000976_110--Hb_000009_030 Hb_000976_110--Hb_003490_060 Hb_000976_110--Hb_000318_150 Hb_000787_200 Hb_000787_200 Hb_000976_110--Hb_000787_200 Hb_000960_080 Hb_000960_080 Hb_000318_150--Hb_000960_080 Hb_002357_070 Hb_002357_070 Hb_000318_150--Hb_002357_070 Hb_000318_150--Hb_000787_200 Hb_000059_240 Hb_000059_240 Hb_000318_150--Hb_000059_240 Hb_000270_170 Hb_000270_170 Hb_000318_150--Hb_000270_170 Hb_000173_190 Hb_000173_190 Hb_000318_150--Hb_000173_190 Hb_002828_060 Hb_002828_060 Hb_003490_060--Hb_002828_060 Hb_106890_010 Hb_106890_010 Hb_003490_060--Hb_106890_010 Hb_002392_020 Hb_002392_020 Hb_003490_060--Hb_002392_020 Hb_003355_010 Hb_003355_010 Hb_003490_060--Hb_003355_010 Hb_004291_040 Hb_004291_040 Hb_027402_130--Hb_004291_040 Hb_027402_130--Hb_000270_170 Hb_000243_120 Hb_000243_120 Hb_027402_130--Hb_000243_120 Hb_005260_030 Hb_005260_030 Hb_027402_130--Hb_005260_030 Hb_027402_130--Hb_106890_010 Hb_027402_130--Hb_003490_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.38507 9.65326 13.1326 8.20749 3.28385 5.18079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.53089 2.40869 2.28293 15.2898 12.8704

CAGE analysis