Hb_088144_020

Information

Type transcription factor
Description TF Family: ARID
Location Contig88144: 14903-21230
Sequence    

Annotation

kegg
ID rcu:RCOM_1565520
description transcription factor, putative
nr
ID XP_012075704.1
description PREDICTED: AT-rich interactive domain-containing protein 6-like isoform X1 [Jatropha curcas]
swissprot
ID Q940Y3
description AT-rich interactive domain-containing protein 3 OS=Arabidopsis thaliana GN=ARID3 PE=1 SV=1
trembl
ID A0A067LF61
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10764 PE=3 SV=1
Gene Ontology
ID GO:0005634
description at-rich interactive domain-containing protein 3-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61439: 14903-21316 , PASA_asmbl_61440: 14903-21316
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_088144_020 0.0 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 6-like isoform X1 [Jatropha curcas]
2 Hb_003142_040 0.0688336878 - - Sf3a3 [Gossypium arboreum]
3 Hb_002968_070 0.0689993804 - - PREDICTED: transcription initiation factor TFIID subunit 4b isoform X2 [Jatropha curcas]
4 Hb_000823_030 0.0718053085 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Jatropha curcas]
5 Hb_001953_120 0.0726497478 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
6 Hb_001221_180 0.0743982706 - - calcineurin-like phosphoesterase [Manihot esculenta]
7 Hb_001171_030 0.0746875144 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like [Jatropha curcas]
8 Hb_003943_020 0.0772225594 - - PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]
9 Hb_000377_050 0.0784897589 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
10 Hb_001723_140 0.0798458256 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]
11 Hb_001009_280 0.0800476268 - - PREDICTED: telomere length regulation protein TEL2 homolog [Jatropha curcas]
12 Hb_000256_020 0.0802193601 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
13 Hb_002217_430 0.0809522956 - - PREDICTED: flowering time control protein FCA isoform X4 [Jatropha curcas]
14 Hb_004064_050 0.0813256867 - - Structural maintenance of chromosome, putative [Ricinus communis]
15 Hb_027472_220 0.0823310851 - - PREDICTED: nucleolar complex protein 3 homolog isoform X1 [Jatropha curcas]
16 Hb_000103_570 0.0832554424 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
17 Hb_002016_090 0.0836081766 - - PREDICTED: DNA mismatch repair protein PMS1 [Jatropha curcas]
18 Hb_005402_040 0.0840827749 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
19 Hb_000523_080 0.0881794049 - - PREDICTED: LOW QUALITY PROTEIN: beta-catenin-like protein 1 [Jatropha curcas]
20 Hb_001047_200 0.088312745 - - PREDICTED: pre-mRNA-splicing factor 18 [Eucalyptus grandis]

Gene co-expression network

sample Hb_088144_020 Hb_088144_020 Hb_003142_040 Hb_003142_040 Hb_088144_020--Hb_003142_040 Hb_002968_070 Hb_002968_070 Hb_088144_020--Hb_002968_070 Hb_000823_030 Hb_000823_030 Hb_088144_020--Hb_000823_030 Hb_001953_120 Hb_001953_120 Hb_088144_020--Hb_001953_120 Hb_001221_180 Hb_001221_180 Hb_088144_020--Hb_001221_180 Hb_001171_030 Hb_001171_030 Hb_088144_020--Hb_001171_030 Hb_003142_040--Hb_002968_070 Hb_003142_040--Hb_001171_030 Hb_003142_040--Hb_001953_120 Hb_001221_090 Hb_001221_090 Hb_003142_040--Hb_001221_090 Hb_000189_630 Hb_000189_630 Hb_003142_040--Hb_000189_630 Hb_001723_140 Hb_001723_140 Hb_003142_040--Hb_001723_140 Hb_002968_070--Hb_001171_030 Hb_002968_070--Hb_001953_120 Hb_002016_090 Hb_002016_090 Hb_002968_070--Hb_002016_090 Hb_000373_170 Hb_000373_170 Hb_002968_070--Hb_000373_170 Hb_000996_020 Hb_000996_020 Hb_002968_070--Hb_000996_020 Hb_001047_200 Hb_001047_200 Hb_000823_030--Hb_001047_200 Hb_000823_030--Hb_003142_040 Hb_007426_060 Hb_007426_060 Hb_000823_030--Hb_007426_060 Hb_000184_150 Hb_000184_150 Hb_000823_030--Hb_000184_150 Hb_000823_030--Hb_001171_030 Hb_004223_160 Hb_004223_160 Hb_001953_120--Hb_004223_160 Hb_005832_010 Hb_005832_010 Hb_001953_120--Hb_005832_010 Hb_000934_210 Hb_000934_210 Hb_001953_120--Hb_000934_210 Hb_002357_070 Hb_002357_070 Hb_001221_180--Hb_002357_070 Hb_000011_270 Hb_000011_270 Hb_001221_180--Hb_000011_270 Hb_019840_030 Hb_019840_030 Hb_001221_180--Hb_019840_030 Hb_060980_010 Hb_060980_010 Hb_001221_180--Hb_060980_010 Hb_003093_040 Hb_003093_040 Hb_001221_180--Hb_003093_040 Hb_000568_050 Hb_000568_050 Hb_001221_180--Hb_000568_050 Hb_001171_030--Hb_001723_140 Hb_001171_030--Hb_000189_630 Hb_000977_300 Hb_000977_300 Hb_001171_030--Hb_000977_300 Hb_000529_060 Hb_000529_060 Hb_001171_030--Hb_000529_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7941 19.1573 17.6865 8.64664 13.7231 11.8852
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.19911 5.74142 6.99219 22.174 15.0802

CAGE analysis