Hb_000184_150

Information

Type -
Description -
Location Contig184: 193990-196494
Sequence    

Annotation

kegg
ID pop:POPTR_0014s16800g
description POPTRDRAFT_573125; armadillo/beta-catenin repeat family protein
nr
ID XP_012089621.1
description PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
swissprot
ID Q8GWV5
description U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2
trembl
ID A0A067JGL9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01729 PE=4 SV=1
Gene Ontology
ID GO:0005515
description u-box domain-containing protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17992: 194433-194747 , PASA_asmbl_17993: 194062-196490
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000184_150 0.0 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
2 Hb_001047_200 0.0652617673 - - PREDICTED: pre-mRNA-splicing factor 18 [Eucalyptus grandis]
3 Hb_000577_030 0.0680319331 - - Ubiquitin carboxyl-terminal hydrolase 12 -like protein [Gossypium arboreum]
4 Hb_000823_030 0.0720776131 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Jatropha curcas]
5 Hb_001723_140 0.0745189309 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]
6 Hb_000917_160 0.0773787072 - - PREDICTED: protein decapping 5 isoform X1 [Jatropha curcas]
7 Hb_006618_090 0.07797362 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
8 Hb_001171_030 0.0790458926 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like [Jatropha curcas]
9 Hb_002045_250 0.0842067469 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Jatropha curcas]
10 Hb_118840_050 0.0848895105 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
11 Hb_000256_020 0.0851704876 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
12 Hb_011920_020 0.0852239949 - - PREDICTED: uncharacterized protein LOC105645397 [Jatropha curcas]
13 Hb_002890_100 0.0866863071 - - PREDICTED: mitotic spindle checkpoint protein MAD1 isoform X1 [Jatropha curcas]
14 Hb_002092_070 0.0887936591 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
15 Hb_003124_160 0.0891876081 - - dynamin, putative [Ricinus communis]
16 Hb_061878_010 0.0893180292 - - hypothetical protein CISIN_1g0094072mg, partial [Citrus sinensis]
17 Hb_000176_130 0.0909738524 - - PREDICTED: probable splicing factor 3A subunit 1 [Jatropha curcas]
18 Hb_001492_040 0.0911296476 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
19 Hb_003142_040 0.0918561875 - - Sf3a3 [Gossypium arboreum]
20 Hb_140049_080 0.0935094484 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]

Gene co-expression network

sample Hb_000184_150 Hb_000184_150 Hb_001047_200 Hb_001047_200 Hb_000184_150--Hb_001047_200 Hb_000577_030 Hb_000577_030 Hb_000184_150--Hb_000577_030 Hb_000823_030 Hb_000823_030 Hb_000184_150--Hb_000823_030 Hb_001723_140 Hb_001723_140 Hb_000184_150--Hb_001723_140 Hb_000917_160 Hb_000917_160 Hb_000184_150--Hb_000917_160 Hb_006618_090 Hb_006618_090 Hb_000184_150--Hb_006618_090 Hb_001047_200--Hb_000577_030 Hb_001047_200--Hb_000823_030 Hb_000236_470 Hb_000236_470 Hb_001047_200--Hb_000236_470 Hb_001021_200 Hb_001021_200 Hb_001047_200--Hb_001021_200 Hb_005542_050 Hb_005542_050 Hb_001047_200--Hb_005542_050 Hb_000577_030--Hb_001021_200 Hb_000577_030--Hb_000917_160 Hb_032920_130 Hb_032920_130 Hb_000577_030--Hb_032920_130 Hb_118840_050 Hb_118840_050 Hb_000577_030--Hb_118840_050 Hb_003142_040 Hb_003142_040 Hb_000823_030--Hb_003142_040 Hb_088144_020 Hb_088144_020 Hb_000823_030--Hb_088144_020 Hb_007426_060 Hb_007426_060 Hb_000823_030--Hb_007426_060 Hb_001171_030 Hb_001171_030 Hb_000823_030--Hb_001171_030 Hb_001723_140--Hb_001171_030 Hb_013358_070 Hb_013358_070 Hb_001723_140--Hb_013358_070 Hb_001584_350 Hb_001584_350 Hb_001723_140--Hb_001584_350 Hb_001723_140--Hb_003142_040 Hb_000027_050 Hb_000027_050 Hb_001723_140--Hb_000027_050 Hb_000529_060 Hb_000529_060 Hb_001723_140--Hb_000529_060 Hb_000062_470 Hb_000062_470 Hb_000917_160--Hb_000062_470 Hb_000191_130 Hb_000191_130 Hb_000917_160--Hb_000191_130 Hb_000917_160--Hb_118840_050 Hb_000406_230 Hb_000406_230 Hb_000917_160--Hb_000406_230 Hb_007558_070 Hb_007558_070 Hb_000917_160--Hb_007558_070 Hb_010417_060 Hb_010417_060 Hb_000917_160--Hb_010417_060 Hb_009771_110 Hb_009771_110 Hb_006618_090--Hb_009771_110 Hb_005053_010 Hb_005053_010 Hb_006618_090--Hb_005053_010 Hb_002686_040 Hb_002686_040 Hb_006618_090--Hb_002686_040 Hb_007929_080 Hb_007929_080 Hb_006618_090--Hb_007929_080 Hb_000523_080 Hb_000523_080 Hb_006618_090--Hb_000523_080 Hb_000261_030 Hb_000261_030 Hb_006618_090--Hb_000261_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.3742 24.313 16.449 12.8409 17.0093 16.7329
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.82568 3.35613 6.53696 19.3746 11.3211

CAGE analysis