Hb_000559_070

Information

Type -
Description -
Location Contig559: 122531-125776
Sequence    

Annotation

kegg
ID rcu:RCOM_1692330
description calcineurin B, putative
nr
ID XP_002509980.1
description calcineurin B, putative [Ricinus communis]
swissprot
ID Q9FUQ7
description Calcineurin B-like protein 8 OS=Arabidopsis thaliana GN=CBL8 PE=1 SV=1
trembl
ID B9RCU6
description Calcineurin B, putative OS=Ricinus communis GN=RCOM_1692330 PE=4 SV=1
Gene Ontology
ID GO:0005622
description calcineurin b-like protein 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48661: 125275-125880
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000559_070 0.0 - - calcineurin B, putative [Ricinus communis]
2 Hb_003266_020 0.1224794335 - - PREDICTED: protein trichome birefringence-like 11 [Jatropha curcas]
3 Hb_001369_230 0.1312765776 - - PREDICTED: F-box protein At5g07670 [Jatropha curcas]
4 Hb_005883_110 0.1419590859 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
5 Hb_000455_130 0.1465638304 - - PREDICTED: aspartic proteinase A1-like isoform X1 [Jatropha curcas]
6 Hb_001123_220 0.1500949073 - - -
7 Hb_098315_090 0.1539976445 - - Aldehyde dehydrogenase family 6 member B2 [Morus notabilis]
8 Hb_000505_100 0.1650507342 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100250663 [Vitis vinifera]
9 Hb_180450_010 0.1652829998 - - FF domain-containing family protein [Populus trichocarpa]
10 Hb_000809_180 0.1741484534 - - -
11 Hb_027136_040 0.1759440772 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
12 Hb_012940_040 0.1784040039 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
13 Hb_000035_010 0.1788443013 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR12-like isoform X1 [Jatropha curcas]
14 Hb_000271_120 0.1797039918 - - PREDICTED: U-box domain-containing protein 13-like [Nelumbo nucifera]
15 Hb_000103_570 0.1800852606 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
16 Hb_011925_020 0.1801397384 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
17 Hb_001221_180 0.1814846243 - - calcineurin-like phosphoesterase [Manihot esculenta]
18 Hb_000122_080 0.1818023543 - - PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]
19 Hb_000022_160 0.1820460119 - - -
20 Hb_003626_050 0.1824295591 - - malic enzyme, putative [Ricinus communis]

Gene co-expression network

sample Hb_000559_070 Hb_000559_070 Hb_003266_020 Hb_003266_020 Hb_000559_070--Hb_003266_020 Hb_001369_230 Hb_001369_230 Hb_000559_070--Hb_001369_230 Hb_005883_110 Hb_005883_110 Hb_000559_070--Hb_005883_110 Hb_000455_130 Hb_000455_130 Hb_000559_070--Hb_000455_130 Hb_001123_220 Hb_001123_220 Hb_000559_070--Hb_001123_220 Hb_098315_090 Hb_098315_090 Hb_000559_070--Hb_098315_090 Hb_002968_070 Hb_002968_070 Hb_003266_020--Hb_002968_070 Hb_003266_020--Hb_005883_110 Hb_001953_120 Hb_001953_120 Hb_003266_020--Hb_001953_120 Hb_012940_040 Hb_012940_040 Hb_003266_020--Hb_012940_040 Hb_015183_100 Hb_015183_100 Hb_003266_020--Hb_015183_100 Hb_088144_020 Hb_088144_020 Hb_003266_020--Hb_088144_020 Hb_000317_350 Hb_000317_350 Hb_001369_230--Hb_000317_350 Hb_001369_230--Hb_003266_020 Hb_009732_020 Hb_009732_020 Hb_001369_230--Hb_009732_020 Hb_001369_230--Hb_005883_110 Hb_000041_060 Hb_000041_060 Hb_001369_230--Hb_000041_060 Hb_000109_260 Hb_000109_260 Hb_005883_110--Hb_000109_260 Hb_000976_110 Hb_000976_110 Hb_005883_110--Hb_000976_110 Hb_000318_150 Hb_000318_150 Hb_005883_110--Hb_000318_150 Hb_003490_060 Hb_003490_060 Hb_005883_110--Hb_003490_060 Hb_027402_130 Hb_027402_130 Hb_005883_110--Hb_027402_130 Hb_019840_030 Hb_019840_030 Hb_000455_130--Hb_019840_030 Hb_000321_090 Hb_000321_090 Hb_000455_130--Hb_000321_090 Hb_006478_030 Hb_006478_030 Hb_000455_130--Hb_006478_030 Hb_001221_180 Hb_001221_180 Hb_000455_130--Hb_001221_180 Hb_007747_170 Hb_007747_170 Hb_000455_130--Hb_007747_170 Hb_080147_050 Hb_080147_050 Hb_000455_130--Hb_080147_050 Hb_001123_220--Hb_001369_230 Hb_003626_050 Hb_003626_050 Hb_001123_220--Hb_003626_050 Hb_002235_050 Hb_002235_050 Hb_001123_220--Hb_002235_050 Hb_004129_050 Hb_004129_050 Hb_001123_220--Hb_004129_050 Hb_001123_220--Hb_009732_020 Hb_000823_010 Hb_000823_010 Hb_098315_090--Hb_000823_010 Hb_000106_020 Hb_000106_020 Hb_098315_090--Hb_000106_020 Hb_000122_080 Hb_000122_080 Hb_098315_090--Hb_000122_080 Hb_002025_270 Hb_002025_270 Hb_098315_090--Hb_002025_270 Hb_004657_030 Hb_004657_030 Hb_098315_090--Hb_004657_030 Hb_098315_090--Hb_000455_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.739326 0.53776 0.68307 0.319831 0.159599 0.302264
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.13043 0.15384 0.185954 1.22354 0.619199

CAGE analysis