Hb_001123_220

Information

Type -
Description -
Location Contig1123: 162293-163986
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03753: 162454-163902
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001123_220 0.0 - - -
2 Hb_001369_230 0.1465591835 - - PREDICTED: F-box protein At5g07670 [Jatropha curcas]
3 Hb_000559_070 0.1500949073 - - calcineurin B, putative [Ricinus communis]
4 Hb_003626_050 0.1510223479 - - malic enzyme, putative [Ricinus communis]
5 Hb_002235_050 0.1548280381 - - PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
6 Hb_004129_050 0.1549411817 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 5 [Jatropha curcas]
7 Hb_009732_020 0.1611001625 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
8 Hb_001500_070 0.1617385344 - - conserved hypothetical protein [Ricinus communis]
9 Hb_008053_060 0.1618899072 - - PREDICTED: protein PAIR1 isoform X2 [Jatropha curcas]
10 Hb_006717_070 0.1623945297 transcription factor TF Family: MYB-related PREDICTED: transcription factor CPC-like [Jatropha curcas]
11 Hb_000505_100 0.1658080063 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100250663 [Vitis vinifera]
12 Hb_000244_280 0.1664485343 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X1 [Jatropha curcas]
13 Hb_007185_040 0.1692804106 - - PREDICTED: pyrroline-5-carboxylate reductase [Jatropha curcas]
14 Hb_000122_080 0.1699029044 - - PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]
15 Hb_000296_010 0.1699381812 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
16 Hb_000622_280 0.1747358196 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
17 Hb_005883_110 0.1756206953 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
18 Hb_002687_060 0.1774166439 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
19 Hb_005180_010 0.179823922 - - cyclophilin [Hevea brasiliensis]
20 Hb_000098_030 0.1798585359 - - MLO-like protein 4 [Gossypium arboreum]

Gene co-expression network

sample Hb_001123_220 Hb_001123_220 Hb_001369_230 Hb_001369_230 Hb_001123_220--Hb_001369_230 Hb_000559_070 Hb_000559_070 Hb_001123_220--Hb_000559_070 Hb_003626_050 Hb_003626_050 Hb_001123_220--Hb_003626_050 Hb_002235_050 Hb_002235_050 Hb_001123_220--Hb_002235_050 Hb_004129_050 Hb_004129_050 Hb_001123_220--Hb_004129_050 Hb_009732_020 Hb_009732_020 Hb_001123_220--Hb_009732_020 Hb_000317_350 Hb_000317_350 Hb_001369_230--Hb_000317_350 Hb_003266_020 Hb_003266_020 Hb_001369_230--Hb_003266_020 Hb_001369_230--Hb_009732_020 Hb_005883_110 Hb_005883_110 Hb_001369_230--Hb_005883_110 Hb_001369_230--Hb_000559_070 Hb_000041_060 Hb_000041_060 Hb_001369_230--Hb_000041_060 Hb_000559_070--Hb_003266_020 Hb_000559_070--Hb_005883_110 Hb_000455_130 Hb_000455_130 Hb_000559_070--Hb_000455_130 Hb_098315_090 Hb_098315_090 Hb_000559_070--Hb_098315_090 Hb_002213_090 Hb_002213_090 Hb_003626_050--Hb_002213_090 Hb_000157_070 Hb_000157_070 Hb_003626_050--Hb_000157_070 Hb_107298_010 Hb_107298_010 Hb_003626_050--Hb_107298_010 Hb_000505_100 Hb_000505_100 Hb_003626_050--Hb_000505_100 Hb_001500_070 Hb_001500_070 Hb_003626_050--Hb_001500_070 Hb_006829_100 Hb_006829_100 Hb_003626_050--Hb_006829_100 Hb_002913_010 Hb_002913_010 Hb_002235_050--Hb_002913_010 Hb_000679_110 Hb_000679_110 Hb_002235_050--Hb_000679_110 Hb_177321_040 Hb_177321_040 Hb_002235_050--Hb_177321_040 Hb_010872_050 Hb_010872_050 Hb_002235_050--Hb_010872_050 Hb_007185_040 Hb_007185_040 Hb_002235_050--Hb_007185_040 Hb_000678_010 Hb_000678_010 Hb_002235_050--Hb_000678_010 Hb_000244_280 Hb_000244_280 Hb_004129_050--Hb_000244_280 Hb_004129_050--Hb_000041_060 Hb_004129_050--Hb_009732_020 Hb_006717_070 Hb_006717_070 Hb_004129_050--Hb_006717_070 Hb_004129_050--Hb_003626_050 Hb_012545_090 Hb_012545_090 Hb_004129_050--Hb_012545_090 Hb_000395_220 Hb_000395_220 Hb_009732_020--Hb_000395_220 Hb_000227_040 Hb_000227_040 Hb_009732_020--Hb_000227_040 Hb_003906_170 Hb_003906_170 Hb_009732_020--Hb_003906_170 Hb_009732_020--Hb_006717_070 Hb_005333_050 Hb_005333_050 Hb_009732_020--Hb_005333_050 Hb_003849_240 Hb_003849_240 Hb_009732_020--Hb_003849_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.38063 6.33859 10.1473 4.30506 2.12897 3.14324
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.33187 2.06989 0.636813 17.2147 3.6487

CAGE analysis