Hb_098315_090

Information

Type -
Description -
Location Contig98315: 56946-61974
Sequence    

Annotation

kegg
ID pop:POPTR_0005s19150g
description POPTRDRAFT_760579; hypothetical protein
nr
ID XP_010112250.1
description Aldehyde dehydrogenase family 6 member B2 [Morus notabilis]
swissprot
ID -
description -
trembl
ID W9SAB8
description Aldehyde dehydrogenase family 6 member B2 OS=Morus notabilis GN=L484_014787 PE=4 SV=1
Gene Ontology
ID GO:0004491
description methylmalonate-semialdehyde dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64501: 57008-59778 , PASA_asmbl_64502: 57553-57695 , PASA_asmbl_64503: 58959-59646 , PASA_asmbl_64504: 59998-60963
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_098315_090 0.0 - - Aldehyde dehydrogenase family 6 member B2 [Morus notabilis]
2 Hb_000823_010 0.1336586079 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
3 Hb_000106_020 0.1341524975 - - PREDICTED: protein TOPLESS isoform X1 [Jatropha curcas]
4 Hb_000122_080 0.1374425046 - - PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]
5 Hb_002025_270 0.1381467717 - - PREDICTED: uncharacterized protein At4g15970 isoform X1 [Jatropha curcas]
6 Hb_004657_030 0.140851559 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
7 Hb_000455_130 0.1421061598 - - PREDICTED: aspartic proteinase A1-like isoform X1 [Jatropha curcas]
8 Hb_002093_050 0.1436791236 - - hypothetical protein POPTR_0008s02940g [Populus trichocarpa]
9 Hb_007123_050 0.1480193786 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
10 Hb_001322_180 0.1507191432 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
11 Hb_001369_230 0.1511082185 - - PREDICTED: F-box protein At5g07670 [Jatropha curcas]
12 Hb_080147_050 0.1514855762 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
13 Hb_000321_090 0.1538371553 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
14 Hb_000559_070 0.1539976445 - - calcineurin B, putative [Ricinus communis]
15 Hb_004746_010 0.1546164947 - - aldo/keto reductase, putative [Ricinus communis]
16 Hb_001789_020 0.1558890248 - - PREDICTED: tripeptidyl-peptidase 2 isoform X1 [Jatropha curcas]
17 Hb_000406_060 0.1573512763 - - hypothetical protein CICLE_v10000115mg [Citrus clementina]
18 Hb_005298_020 0.157945553 - - PREDICTED: anaphase-promoting complex subunit 2 [Jatropha curcas]
19 Hb_006829_100 0.160061553 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002374_210 0.1610215082 - - PREDICTED: uncharacterized protein LOC105638976 [Jatropha curcas]

Gene co-expression network

sample Hb_098315_090 Hb_098315_090 Hb_000823_010 Hb_000823_010 Hb_098315_090--Hb_000823_010 Hb_000106_020 Hb_000106_020 Hb_098315_090--Hb_000106_020 Hb_000122_080 Hb_000122_080 Hb_098315_090--Hb_000122_080 Hb_002025_270 Hb_002025_270 Hb_098315_090--Hb_002025_270 Hb_004657_030 Hb_004657_030 Hb_098315_090--Hb_004657_030 Hb_000455_130 Hb_000455_130 Hb_098315_090--Hb_000455_130 Hb_000019_170 Hb_000019_170 Hb_000823_010--Hb_000019_170 Hb_153257_010 Hb_153257_010 Hb_000823_010--Hb_153257_010 Hb_000157_070 Hb_000157_070 Hb_000823_010--Hb_000157_070 Hb_001322_180 Hb_001322_180 Hb_000823_010--Hb_001322_180 Hb_003058_200 Hb_003058_200 Hb_000823_010--Hb_003058_200 Hb_000834_230 Hb_000834_230 Hb_000823_010--Hb_000834_230 Hb_000106_020--Hb_000122_080 Hb_033554_020 Hb_033554_020 Hb_000106_020--Hb_033554_020 Hb_001373_160 Hb_001373_160 Hb_000106_020--Hb_001373_160 Hb_000406_060 Hb_000406_060 Hb_000106_020--Hb_000406_060 Hb_143960_010 Hb_143960_010 Hb_000106_020--Hb_143960_010 Hb_002596_060 Hb_002596_060 Hb_000122_080--Hb_002596_060 Hb_001733_030 Hb_001733_030 Hb_000122_080--Hb_001733_030 Hb_006501_010 Hb_006501_010 Hb_000122_080--Hb_006501_010 Hb_006829_100 Hb_006829_100 Hb_000122_080--Hb_006829_100 Hb_019840_030 Hb_019840_030 Hb_000122_080--Hb_019840_030 Hb_002259_080 Hb_002259_080 Hb_000122_080--Hb_002259_080 Hb_005298_020 Hb_005298_020 Hb_002025_270--Hb_005298_020 Hb_001646_010 Hb_001646_010 Hb_002025_270--Hb_001646_010 Hb_005772_030 Hb_005772_030 Hb_002025_270--Hb_005772_030 Hb_024758_020 Hb_024758_020 Hb_002025_270--Hb_024758_020 Hb_002809_160 Hb_002809_160 Hb_002025_270--Hb_002809_160 Hb_003050_150 Hb_003050_150 Hb_002025_270--Hb_003050_150 Hb_004657_030--Hb_003058_200 Hb_000723_010 Hb_000723_010 Hb_004657_030--Hb_000723_010 Hb_002072_010 Hb_002072_010 Hb_004657_030--Hb_002072_010 Hb_000244_260 Hb_000244_260 Hb_004657_030--Hb_000244_260 Hb_150346_010 Hb_150346_010 Hb_004657_030--Hb_150346_010 Hb_000455_130--Hb_019840_030 Hb_000321_090 Hb_000321_090 Hb_000455_130--Hb_000321_090 Hb_006478_030 Hb_006478_030 Hb_000455_130--Hb_006478_030 Hb_001221_180 Hb_001221_180 Hb_000455_130--Hb_001221_180 Hb_007747_170 Hb_007747_170 Hb_000455_130--Hb_007747_170 Hb_080147_050 Hb_080147_050 Hb_000455_130--Hb_080147_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.21675 1.52812 1.94769 1.37096 1.12582 0.965517
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.246945 0.107939 0.366513 4.0097 2.17742

CAGE analysis