Hb_000406_060

Information

Type -
Description -
Location Contig406: 53453-66034
Sequence    

Annotation

kegg
ID cic:CICLE_v10000115mg
description hypothetical protein
nr
ID XP_006433136.1
description hypothetical protein CICLE_v10000115mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4T9Y2
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000115mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40253: 62677-62862 , PASA_asmbl_40255: 63924-64030
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000406_060 0.0 - - hypothetical protein CICLE_v10000115mg [Citrus clementina]
2 Hb_006829_100 0.1139156096 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002374_210 0.1281513709 - - PREDICTED: uncharacterized protein LOC105638976 [Jatropha curcas]
4 Hb_001006_340 0.1288559776 - - PREDICTED: sodium/hydrogen exchanger 7-like [Malus domestica]
5 Hb_000106_020 0.130646662 - - PREDICTED: protein TOPLESS isoform X1 [Jatropha curcas]
6 Hb_003913_110 0.1325289038 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
7 Hb_002005_080 0.1345003786 - - PREDICTED: uncharacterized protein LOC105649750 isoform X1 [Jatropha curcas]
8 Hb_000512_030 0.1345275124 - - wall-associated kinase, putative [Ricinus communis]
9 Hb_001322_180 0.136399998 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
10 Hb_000175_120 0.1368647374 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
11 Hb_007426_140 0.1400288753 - - ornithine aminotransferase, putative [Ricinus communis]
12 Hb_000940_150 0.1401007391 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
13 Hb_000022_170 0.1407062335 - - PREDICTED: uncharacterized protein LOC105628473 [Jatropha curcas]
14 Hb_007123_050 0.1410964377 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
15 Hb_002027_190 0.1416108068 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
16 Hb_000950_060 0.1433087623 - - PREDICTED: CCAAT/enhancer-binding protein zeta [Jatropha curcas]
17 Hb_000122_080 0.1447984479 - - PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]
18 Hb_044486_040 0.1450047063 - - PREDICTED: ion channel CASTOR-like [Malus domestica]
19 Hb_000237_190 0.1452633999 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X1 [Jatropha curcas]
20 Hb_000631_110 0.145649541 - - PREDICTED: activating signal cointegrator 1 complex subunit 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000406_060 Hb_000406_060 Hb_006829_100 Hb_006829_100 Hb_000406_060--Hb_006829_100 Hb_002374_210 Hb_002374_210 Hb_000406_060--Hb_002374_210 Hb_001006_340 Hb_001006_340 Hb_000406_060--Hb_001006_340 Hb_000106_020 Hb_000106_020 Hb_000406_060--Hb_000106_020 Hb_003913_110 Hb_003913_110 Hb_000406_060--Hb_003913_110 Hb_002005_080 Hb_002005_080 Hb_000406_060--Hb_002005_080 Hb_007747_170 Hb_007747_170 Hb_006829_100--Hb_007747_170 Hb_001322_180 Hb_001322_180 Hb_006829_100--Hb_001322_180 Hb_007426_140 Hb_007426_140 Hb_006829_100--Hb_007426_140 Hb_019840_030 Hb_019840_030 Hb_006829_100--Hb_019840_030 Hb_000009_120 Hb_000009_120 Hb_006829_100--Hb_000009_120 Hb_000834_230 Hb_000834_230 Hb_006829_100--Hb_000834_230 Hb_005298_020 Hb_005298_020 Hb_002374_210--Hb_005298_020 Hb_044486_040 Hb_044486_040 Hb_002374_210--Hb_044486_040 Hb_001646_010 Hb_001646_010 Hb_002374_210--Hb_001646_010 Hb_000243_130 Hb_000243_130 Hb_002374_210--Hb_000243_130 Hb_007894_160 Hb_007894_160 Hb_002374_210--Hb_007894_160 Hb_004064_050 Hb_004064_050 Hb_002374_210--Hb_004064_050 Hb_001006_340--Hb_002005_080 Hb_004411_030 Hb_004411_030 Hb_001006_340--Hb_004411_030 Hb_003060_060 Hb_003060_060 Hb_001006_340--Hb_003060_060 Hb_001431_120 Hb_001431_120 Hb_001006_340--Hb_001431_120 Hb_001754_040 Hb_001754_040 Hb_001006_340--Hb_001754_040 Hb_041327_010 Hb_041327_010 Hb_001006_340--Hb_041327_010 Hb_000122_080 Hb_000122_080 Hb_000106_020--Hb_000122_080 Hb_033554_020 Hb_033554_020 Hb_000106_020--Hb_033554_020 Hb_001373_160 Hb_001373_160 Hb_000106_020--Hb_001373_160 Hb_098315_090 Hb_098315_090 Hb_000106_020--Hb_098315_090 Hb_143960_010 Hb_143960_010 Hb_000106_020--Hb_143960_010 Hb_001452_220 Hb_001452_220 Hb_003913_110--Hb_001452_220 Hb_000608_230 Hb_000608_230 Hb_003913_110--Hb_000608_230 Hb_011173_030 Hb_011173_030 Hb_003913_110--Hb_011173_030 Hb_000307_210 Hb_000307_210 Hb_003913_110--Hb_000307_210 Hb_000740_100 Hb_000740_100 Hb_003913_110--Hb_000740_100 Hb_028487_010 Hb_028487_010 Hb_003913_110--Hb_028487_010 Hb_000684_290 Hb_000684_290 Hb_002005_080--Hb_000684_290 Hb_002005_080--Hb_041327_010 Hb_002639_080 Hb_002639_080 Hb_002005_080--Hb_002639_080 Hb_000083_270 Hb_000083_270 Hb_002005_080--Hb_000083_270 Hb_003498_130 Hb_003498_130 Hb_002005_080--Hb_003498_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.379777 0.784125 0.452702 0.509251 0.71161 0.575194
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0722026 0.123981 0.299039 1.58315 0.511839

CAGE analysis