Hb_002259_080

Information

Type -
Description -
Location Contig2259: 43937-51522
Sequence    

Annotation

kegg
ID rcu:RCOM_0659690
description protein transport protein sec23, putative
nr
ID XP_002526529.1
description protein transport protein sec23, putative [Ricinus communis]
swissprot
ID Q4PE39
description Protein transport protein SEC23 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SEC23 PE=3 SV=1
trembl
ID B9SKJ9
description Protein transport protein sec23, putative OS=Ricinus communis GN=RCOM_0659690 PE=4 SV=1
Gene Ontology
ID GO:0030127
description protein transport protein sec23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23460: 45629-46388 , PASA_asmbl_23461: 46389-51287
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002259_080 0.0 - - protein transport protein sec23, putative [Ricinus communis]
2 Hb_000635_030 0.0718902069 - - mannosyl-oligosaccharide glucosidase, putative [Ricinus communis]
3 Hb_141069_010 0.0786137951 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000130_020 0.0814143602 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
5 Hb_002596_060 0.0833365136 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000243_300 0.0833676668 - - catalytic, putative [Ricinus communis]
7 Hb_002391_360 0.0911382912 - - hypothetical protein CICLE_v10026208mg [Citrus clementina]
8 Hb_005333_050 0.0945737567 - - PREDICTED: glucose-6-phosphate isomerase 1, chloroplastic [Jatropha curcas]
9 Hb_000365_030 0.0962668195 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
10 Hb_019840_030 0.0962998928 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
11 Hb_000120_280 0.1005017849 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
12 Hb_002046_010 0.1020568739 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000237_190 0.1035522901 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X1 [Jatropha curcas]
14 Hb_000161_210 0.1045462572 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
15 Hb_007747_170 0.1084978211 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
16 Hb_025194_020 0.1087548824 - - PREDICTED: uncharacterized protein C1F8.04c-like isoform X1 [Jatropha curcas]
17 Hb_001733_030 0.108786791 - - PREDICTED: uncharacterized protein LOC100261386 isoform X2 [Vitis vinifera]
18 Hb_000122_080 0.1093298476 - - PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]
19 Hb_039946_050 0.1096564219 - - catalytic, putative [Ricinus communis]
20 Hb_007894_160 0.1099970397 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]

Gene co-expression network

sample Hb_002259_080 Hb_002259_080 Hb_000635_030 Hb_000635_030 Hb_002259_080--Hb_000635_030 Hb_141069_010 Hb_141069_010 Hb_002259_080--Hb_141069_010 Hb_000130_020 Hb_000130_020 Hb_002259_080--Hb_000130_020 Hb_002596_060 Hb_002596_060 Hb_002259_080--Hb_002596_060 Hb_000243_300 Hb_000243_300 Hb_002259_080--Hb_000243_300 Hb_002391_360 Hb_002391_360 Hb_002259_080--Hb_002391_360 Hb_000635_030--Hb_000130_020 Hb_000635_030--Hb_141069_010 Hb_001668_010 Hb_001668_010 Hb_000635_030--Hb_001668_010 Hb_000120_280 Hb_000120_280 Hb_000635_030--Hb_000120_280 Hb_004267_040 Hb_004267_040 Hb_000635_030--Hb_004267_040 Hb_141069_010--Hb_000243_300 Hb_000258_110 Hb_000258_110 Hb_141069_010--Hb_000258_110 Hb_141069_010--Hb_000130_020 Hb_039946_050 Hb_039946_050 Hb_141069_010--Hb_039946_050 Hb_178968_050 Hb_178968_050 Hb_000130_020--Hb_178968_050 Hb_000130_020--Hb_000120_280 Hb_140049_080 Hb_140049_080 Hb_000130_020--Hb_140049_080 Hb_001318_020 Hb_001318_020 Hb_000130_020--Hb_001318_020 Hb_019840_030 Hb_019840_030 Hb_002596_060--Hb_019840_030 Hb_004837_280 Hb_004837_280 Hb_002596_060--Hb_004837_280 Hb_000122_080 Hb_000122_080 Hb_002596_060--Hb_000122_080 Hb_060980_010 Hb_060980_010 Hb_002596_060--Hb_060980_010 Hb_000161_210 Hb_000161_210 Hb_002596_060--Hb_000161_210 Hb_001085_110 Hb_001085_110 Hb_000243_300--Hb_001085_110 Hb_004109_370 Hb_004109_370 Hb_000243_300--Hb_004109_370 Hb_009252_050 Hb_009252_050 Hb_000243_300--Hb_009252_050 Hb_188063_050 Hb_188063_050 Hb_000243_300--Hb_188063_050 Hb_000243_300--Hb_039946_050 Hb_000365_030 Hb_000365_030 Hb_002391_360--Hb_000365_030 Hb_002391_360--Hb_000130_020 Hb_006501_010 Hb_006501_010 Hb_002391_360--Hb_006501_010 Hb_005730_010 Hb_005730_010 Hb_002391_360--Hb_005730_010 Hb_002391_360--Hb_000635_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.72559 7.82937 7.66657 9.89603 10.3358 5.52469
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.77918 4.12056 3.34511 15.3274 6.14583

CAGE analysis