Hb_002025_270

Information

Type -
Description -
Location Contig2025: 212298-216454
Sequence    

Annotation

kegg
ID rcu:RCOM_0775780
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012072411.1
description PREDICTED: uncharacterized protein At4g15970 isoform X1 [Jatropha curcas]
swissprot
ID P0C042
description Uncharacterized protein At4g15970 OS=Arabidopsis thaliana GN=At4g15970 PE=2 SV=1
trembl
ID A0A067KPV4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04849 PE=4 SV=1
Gene Ontology
ID GO:0016301
description pentatricopeptide repeat-containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20591: 212320-215148 , PASA_asmbl_20592: 215879-216039
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002025_270 0.0 - - PREDICTED: uncharacterized protein At4g15970 isoform X1 [Jatropha curcas]
2 Hb_005298_020 0.1036056851 - - PREDICTED: anaphase-promoting complex subunit 2 [Jatropha curcas]
3 Hb_001646_010 0.1063784959 - - hypothetical protein JCGZ_16333 [Jatropha curcas]
4 Hb_005772_030 0.1088503843 - - PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]
5 Hb_024758_020 0.1120112705 - - acyl-CoA binding protein 3B [Vernicia fordii]
6 Hb_002809_160 0.1136794319 - - PREDICTED: protein FAM63A [Jatropha curcas]
7 Hb_003050_150 0.1161836522 - - endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative [Ricinus communis]
8 Hb_001375_040 0.1178950703 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
9 Hb_002259_110 0.1180399443 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
10 Hb_103688_010 0.1211685464 - - PREDICTED: sucrose-phosphatase 2-like [Jatropha curcas]
11 Hb_001205_180 0.1213760281 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
12 Hb_044486_040 0.1232027126 - - PREDICTED: ion channel CASTOR-like [Malus domestica]
13 Hb_143629_020 0.1241743842 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
14 Hb_004294_020 0.1255050178 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
15 Hb_002374_210 0.1258693772 - - PREDICTED: uncharacterized protein LOC105638976 [Jatropha curcas]
16 Hb_002553_010 0.1293786909 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 2-like [Populus euphratica]
17 Hb_158845_060 0.1311080822 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
18 Hb_000665_260 0.1311090837 - - PREDICTED: uncharacterized protein LOC105637620 isoform X1 [Jatropha curcas]
19 Hb_011202_030 0.1314971223 - - arsenite-resistance protein, putative [Ricinus communis]
20 Hb_004800_130 0.1331158705 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]

Gene co-expression network

sample Hb_002025_270 Hb_002025_270 Hb_005298_020 Hb_005298_020 Hb_002025_270--Hb_005298_020 Hb_001646_010 Hb_001646_010 Hb_002025_270--Hb_001646_010 Hb_005772_030 Hb_005772_030 Hb_002025_270--Hb_005772_030 Hb_024758_020 Hb_024758_020 Hb_002025_270--Hb_024758_020 Hb_002809_160 Hb_002809_160 Hb_002025_270--Hb_002809_160 Hb_003050_150 Hb_003050_150 Hb_002025_270--Hb_003050_150 Hb_002374_210 Hb_002374_210 Hb_005298_020--Hb_002374_210 Hb_158845_060 Hb_158845_060 Hb_005298_020--Hb_158845_060 Hb_005298_020--Hb_024758_020 Hb_080147_050 Hb_080147_050 Hb_005298_020--Hb_080147_050 Hb_002007_260 Hb_002007_260 Hb_005298_020--Hb_002007_260 Hb_007894_160 Hb_007894_160 Hb_005298_020--Hb_007894_160 Hb_044486_040 Hb_044486_040 Hb_001646_010--Hb_044486_040 Hb_001341_160 Hb_001341_160 Hb_001646_010--Hb_001341_160 Hb_001646_010--Hb_002374_210 Hb_011202_030 Hb_011202_030 Hb_001646_010--Hb_011202_030 Hb_000010_420 Hb_000010_420 Hb_001646_010--Hb_000010_420 Hb_002005_030 Hb_002005_030 Hb_001646_010--Hb_002005_030 Hb_000984_140 Hb_000984_140 Hb_005772_030--Hb_000984_140 Hb_005772_030--Hb_002809_160 Hb_004204_210 Hb_004204_210 Hb_005772_030--Hb_004204_210 Hb_012353_040 Hb_012353_040 Hb_005772_030--Hb_012353_040 Hb_009078_020 Hb_009078_020 Hb_005772_030--Hb_009078_020 Hb_002849_050 Hb_002849_050 Hb_024758_020--Hb_002849_050 Hb_024758_020--Hb_158845_060 Hb_000297_030 Hb_000297_030 Hb_024758_020--Hb_000297_030 Hb_032823_020 Hb_032823_020 Hb_024758_020--Hb_032823_020 Hb_003964_110 Hb_003964_110 Hb_024758_020--Hb_003964_110 Hb_143629_020 Hb_143629_020 Hb_002809_160--Hb_143629_020 Hb_001414_010 Hb_001414_010 Hb_002809_160--Hb_001414_010 Hb_029552_020 Hb_029552_020 Hb_002809_160--Hb_029552_020 Hb_005305_130 Hb_005305_130 Hb_002809_160--Hb_005305_130 Hb_002809_160--Hb_009078_020 Hb_000172_360 Hb_000172_360 Hb_002809_160--Hb_000172_360 Hb_000732_230 Hb_000732_230 Hb_003050_150--Hb_000732_230 Hb_001205_180 Hb_001205_180 Hb_003050_150--Hb_001205_180 Hb_115513_040 Hb_115513_040 Hb_003050_150--Hb_115513_040 Hb_004800_130 Hb_004800_130 Hb_003050_150--Hb_004800_130 Hb_002553_010 Hb_002553_010 Hb_003050_150--Hb_002553_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.63383 5.7937 5.87435 3.91959 3.1916 3.40887
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.887342 0.379 0.603415 6.85598 4.49597

CAGE analysis