Hb_001500_070

Information

Type -
Description -
Location Contig1500: 74339-75535
Sequence    

Annotation

kegg
ID rcu:RCOM_1437530
description hypothetical protein
nr
ID XP_002512625.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RFV6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1437530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12535: 74541-75545
cDNA
(Sanger)
(ID:Location)		 013_H14.ab1: 74546-75472

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001500_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003626_050 0.1080236487 - - malic enzyme, putative [Ricinus communis]
3 Hb_004041_100 0.1179766642 - - -
4 Hb_002213_090 0.1181342529 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]
5 Hb_000625_030 0.1211820137 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
6 Hb_000347_110 0.1255462366 - - BnaA05g25330D [Brassica napus]
7 Hb_012325_010 0.1277125144 - - hypothetical protein RCOM_0068670 [Ricinus communis]
8 Hb_000684_360 0.1304575574 transcription factor TF Family: AP2 hypothetical protein JCGZ_16454 [Jatropha curcas]
9 Hb_107298_010 0.1323649058 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
10 Hb_000041_060 0.1334304869 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
11 Hb_003626_040 0.1337038437 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X2 [Jatropha curcas]
12 Hb_000181_020 0.1351748997 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like [Jatropha curcas]
13 Hb_008749_020 0.1379411307 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003813_120 0.1421713387 - - zinc finger protein, putative [Ricinus communis]
15 Hb_002539_010 0.1427830503 - - hypothetical protein JCGZ_15711 [Jatropha curcas]
16 Hb_000094_370 0.142814941 - - -
17 Hb_000173_260 0.1429126094 - - hypothetical protein L484_010046 [Morus notabilis]
18 Hb_000157_070 0.1430480445 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]
19 Hb_004129_050 0.1436326645 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 5 [Jatropha curcas]
20 Hb_009732_020 0.1478383522 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]

Gene co-expression network

sample Hb_001500_070 Hb_001500_070 Hb_003626_050 Hb_003626_050 Hb_001500_070--Hb_003626_050 Hb_004041_100 Hb_004041_100 Hb_001500_070--Hb_004041_100 Hb_002213_090 Hb_002213_090 Hb_001500_070--Hb_002213_090 Hb_000625_030 Hb_000625_030 Hb_001500_070--Hb_000625_030 Hb_000347_110 Hb_000347_110 Hb_001500_070--Hb_000347_110 Hb_012325_010 Hb_012325_010 Hb_001500_070--Hb_012325_010 Hb_003626_050--Hb_002213_090 Hb_000157_070 Hb_000157_070 Hb_003626_050--Hb_000157_070 Hb_107298_010 Hb_107298_010 Hb_003626_050--Hb_107298_010 Hb_000505_100 Hb_000505_100 Hb_003626_050--Hb_000505_100 Hb_006829_100 Hb_006829_100 Hb_003626_050--Hb_006829_100 Hb_004041_100--Hb_000347_110 Hb_004041_100--Hb_000625_030 Hb_000181_020 Hb_000181_020 Hb_004041_100--Hb_000181_020 Hb_000173_260 Hb_000173_260 Hb_004041_100--Hb_000173_260 Hb_008749_020 Hb_008749_020 Hb_004041_100--Hb_008749_020 Hb_002213_090--Hb_000157_070 Hb_001780_150 Hb_001780_150 Hb_002213_090--Hb_001780_150 Hb_002477_040 Hb_002477_040 Hb_002213_090--Hb_002477_040 Hb_135959_010 Hb_135959_010 Hb_002213_090--Hb_135959_010 Hb_002213_090--Hb_107298_010 Hb_000625_030--Hb_008749_020 Hb_000625_030--Hb_000181_020 Hb_001040_150 Hb_001040_150 Hb_000625_030--Hb_001040_150 Hb_000720_090 Hb_000720_090 Hb_000625_030--Hb_000720_090 Hb_003813_120 Hb_003813_120 Hb_000347_110--Hb_003813_120 Hb_000347_110--Hb_000173_260 Hb_011360_060 Hb_011360_060 Hb_000347_110--Hb_011360_060 Hb_000347_110--Hb_000181_020 Hb_003626_040 Hb_003626_040 Hb_000347_110--Hb_003626_040 Hb_006916_110 Hb_006916_110 Hb_012325_010--Hb_006916_110 Hb_000227_330 Hb_000227_330 Hb_012325_010--Hb_000227_330 Hb_000342_050 Hb_000342_050 Hb_012325_010--Hb_000342_050 Hb_000125_180 Hb_000125_180 Hb_012325_010--Hb_000125_180 Hb_012325_010--Hb_000157_070 Hb_020805_180 Hb_020805_180 Hb_012325_010--Hb_020805_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.35157 5.38637 7.03122 6.8145 1.39706 3.03421
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.92732 3.01454 0.756177 18.9979 6.87853

CAGE analysis