Hb_004041_100

Information

Type -
Description -
Location Contig4041: 93935-98503
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40113: 95197-95730
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004041_100 0.0 - - -
2 Hb_000347_110 0.1031217331 - - BnaA05g25330D [Brassica napus]
3 Hb_000625_030 0.1032455782 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
4 Hb_000181_020 0.1042843103 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like [Jatropha curcas]
5 Hb_000173_260 0.108231052 - - hypothetical protein L484_010046 [Morus notabilis]
6 Hb_008749_020 0.1102978437 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001500_070 0.1179766642 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002272_230 0.1283945413 - - sodium/hydrogen exchanger, putative [Ricinus communis]
9 Hb_003626_040 0.1364620915 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X2 [Jatropha curcas]
10 Hb_000227_330 0.1464697965 - - Acyl-CoA synthetase [Ricinus communis]
11 Hb_011360_060 0.1486406766 - - glycogen phosphorylase, putative [Ricinus communis]
12 Hb_003813_120 0.1534033239 - - zinc finger protein, putative [Ricinus communis]
13 Hb_005181_180 0.1546582784 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000702_060 0.157295426 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000684_360 0.1579172801 transcription factor TF Family: AP2 hypothetical protein JCGZ_16454 [Jatropha curcas]
16 Hb_004631_080 0.1594937762 - - P3B-ATPase PH1 [Petunia x hybrida]
17 Hb_001776_010 0.1666354589 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
18 Hb_000720_090 0.168013456 transcription factor TF Family: MYB myb, putative [Ricinus communis]
19 Hb_000337_010 0.1681802633 - - PREDICTED: proteasome activator subunit 4 isoform X2 [Jatropha curcas]
20 Hb_002539_010 0.16840832 - - hypothetical protein JCGZ_15711 [Jatropha curcas]

Gene co-expression network

sample Hb_004041_100 Hb_004041_100 Hb_000347_110 Hb_000347_110 Hb_004041_100--Hb_000347_110 Hb_000625_030 Hb_000625_030 Hb_004041_100--Hb_000625_030 Hb_000181_020 Hb_000181_020 Hb_004041_100--Hb_000181_020 Hb_000173_260 Hb_000173_260 Hb_004041_100--Hb_000173_260 Hb_008749_020 Hb_008749_020 Hb_004041_100--Hb_008749_020 Hb_001500_070 Hb_001500_070 Hb_004041_100--Hb_001500_070 Hb_003813_120 Hb_003813_120 Hb_000347_110--Hb_003813_120 Hb_000347_110--Hb_000173_260 Hb_011360_060 Hb_011360_060 Hb_000347_110--Hb_011360_060 Hb_000347_110--Hb_000181_020 Hb_003626_040 Hb_003626_040 Hb_000347_110--Hb_003626_040 Hb_000625_030--Hb_008749_020 Hb_000625_030--Hb_000181_020 Hb_000625_030--Hb_001500_070 Hb_001040_150 Hb_001040_150 Hb_000625_030--Hb_001040_150 Hb_000720_090 Hb_000720_090 Hb_000625_030--Hb_000720_090 Hb_000181_020--Hb_011360_060 Hb_006846_120 Hb_006846_120 Hb_000181_020--Hb_006846_120 Hb_000181_020--Hb_001500_070 Hb_000173_260--Hb_011360_060 Hb_000173_260--Hb_000625_030 Hb_002272_230 Hb_002272_230 Hb_000173_260--Hb_002272_230 Hb_000173_260--Hb_000181_020 Hb_000907_150 Hb_000907_150 Hb_008749_020--Hb_000907_150 Hb_000406_090 Hb_000406_090 Hb_008749_020--Hb_000406_090 Hb_008749_020--Hb_000720_090 Hb_008749_020--Hb_001500_070 Hb_003626_050 Hb_003626_050 Hb_001500_070--Hb_003626_050 Hb_002213_090 Hb_002213_090 Hb_001500_070--Hb_002213_090 Hb_001500_070--Hb_000347_110 Hb_012325_010 Hb_012325_010 Hb_001500_070--Hb_012325_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.232002 1.87132 1.96799 1.60247 0.370198 0.362263
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.884618 0.521862 0.193414 6.09895 2.07928

CAGE analysis