Hb_000720_090

Information

Type transcription factor
Description TF Family: MYB
Location Contig720: 130081-134101
Sequence    

Annotation

kegg
ID rcu:RCOM_1685820
description myb, putative
nr
ID XP_002509747.1
description myb, putative [Ricinus communis]
swissprot
ID Q9S7G7
description Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1
trembl
ID B9RC63
description Myb, putative OS=Ricinus communis GN=RCOM_1685820 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-related protein b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000720_090 0.0 transcription factor TF Family: MYB myb, putative [Ricinus communis]
2 Hb_000707_010 0.1157868867 - - hypothetical protein JCGZ_25098 [Jatropha curcas]
3 Hb_000625_030 0.1272698492 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
4 Hb_008749_020 0.1327572923 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000042_380 0.1433928229 - - PREDICTED: uncharacterized membrane protein At3g27390 [Jatropha curcas]
6 Hb_002527_060 0.1536398468 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
7 Hb_008695_150 0.1611160408 - - PREDICTED: beta-1,3-galactosyltransferase 7 isoform X1 [Jatropha curcas]
8 Hb_000009_440 0.1629139626 - - PREDICTED: uncharacterized protein LOC105639617 [Jatropha curcas]
9 Hb_002739_040 0.1630487654 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
10 Hb_021409_140 0.1642028498 - - PREDICTED: trehalase isoform X1 [Jatropha curcas]
11 Hb_001040_150 0.164816325 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000406_090 0.1655948947 - - unknown [Populus trichocarpa]
13 Hb_010672_080 0.1663051922 transcription factor TF Family: MYB hypothetical protein JCGZ_00902 [Jatropha curcas]
14 Hb_003086_010 0.1666756584 - - hypothetical protein JCGZ_06093 [Jatropha curcas]
15 Hb_004041_100 0.168013456 - - -
16 Hb_001414_020 0.1695897536 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
17 Hb_002811_020 0.1706983435 - - Cysteine synthase [Morus notabilis]
18 Hb_001439_040 0.1713748116 - - PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
19 Hb_101449_010 0.1722807126 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
20 Hb_000116_120 0.172925736 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]

Gene co-expression network

sample Hb_000720_090 Hb_000720_090 Hb_000707_010 Hb_000707_010 Hb_000720_090--Hb_000707_010 Hb_000625_030 Hb_000625_030 Hb_000720_090--Hb_000625_030 Hb_008749_020 Hb_008749_020 Hb_000720_090--Hb_008749_020 Hb_000042_380 Hb_000042_380 Hb_000720_090--Hb_000042_380 Hb_002527_060 Hb_002527_060 Hb_000720_090--Hb_002527_060 Hb_008695_150 Hb_008695_150 Hb_000720_090--Hb_008695_150 Hb_134911_010 Hb_134911_010 Hb_000707_010--Hb_134911_010 Hb_000077_400 Hb_000077_400 Hb_000707_010--Hb_000077_400 Hb_021409_140 Hb_021409_140 Hb_000707_010--Hb_021409_140 Hb_000707_010--Hb_000042_380 Hb_001439_040 Hb_001439_040 Hb_000707_010--Hb_001439_040 Hb_000625_030--Hb_008749_020 Hb_004041_100 Hb_004041_100 Hb_000625_030--Hb_004041_100 Hb_000181_020 Hb_000181_020 Hb_000625_030--Hb_000181_020 Hb_001500_070 Hb_001500_070 Hb_000625_030--Hb_001500_070 Hb_001040_150 Hb_001040_150 Hb_000625_030--Hb_001040_150 Hb_008749_020--Hb_004041_100 Hb_000907_150 Hb_000907_150 Hb_008749_020--Hb_000907_150 Hb_000406_090 Hb_000406_090 Hb_008749_020--Hb_000406_090 Hb_008749_020--Hb_001500_070 Hb_000042_380--Hb_008695_150 Hb_005545_020 Hb_005545_020 Hb_000042_380--Hb_005545_020 Hb_007575_030 Hb_007575_030 Hb_000042_380--Hb_007575_030 Hb_001277_400 Hb_001277_400 Hb_000042_380--Hb_001277_400 Hb_005568_050 Hb_005568_050 Hb_000042_380--Hb_005568_050 Hb_004883_020 Hb_004883_020 Hb_000042_380--Hb_004883_020 Hb_005181_060 Hb_005181_060 Hb_002527_060--Hb_005181_060 Hb_001894_010 Hb_001894_010 Hb_002527_060--Hb_001894_010 Hb_000590_070 Hb_000590_070 Hb_002527_060--Hb_000590_070 Hb_001619_030 Hb_001619_030 Hb_002527_060--Hb_001619_030 Hb_005485_070 Hb_005485_070 Hb_002527_060--Hb_005485_070 Hb_002739_040 Hb_002739_040 Hb_002527_060--Hb_002739_040 Hb_008695_150--Hb_005485_070 Hb_005333_080 Hb_005333_080 Hb_008695_150--Hb_005333_080 Hb_000116_240 Hb_000116_240 Hb_008695_150--Hb_000116_240 Hb_001439_010 Hb_001439_010 Hb_008695_150--Hb_001439_010 Hb_000731_210 Hb_000731_210 Hb_008695_150--Hb_000731_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0798872 0.318895 1.01621 0.916561 0.0717845 0.0270377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.149834 0.218949 0.0639566 2.05617 0.997993

CAGE analysis