Hb_021409_140

Information

Type -
Description -
Location Contig21409: 99272-103561
Sequence    

Annotation

kegg
ID rcu:RCOM_1312580
description alpha,alpha-trehalase, putative (EC:3.2.1.28)
nr
ID XP_012086663.1
description PREDICTED: trehalase isoform X1 [Jatropha curcas]
swissprot
ID Q9SU50
description Trehalase OS=Arabidopsis thaliana GN=TRE1 PE=2 SV=1
trembl
ID A0A067K0F1
description Trehalase OS=Jatropha curcas GN=JCGZ_20405 PE=3 SV=1
Gene Ontology
ID GO:0004555
description probable trehalase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22124: 99255-103576 , PASA_asmbl_22125: 99409-102937
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021409_140 0.0 - - PREDICTED: trehalase isoform X1 [Jatropha curcas]
2 Hb_000186_290 0.1577014419 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X1 [Jatropha curcas]
3 Hb_000116_120 0.1634781409 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
4 Hb_000707_010 0.1639660771 - - hypothetical protein JCGZ_25098 [Jatropha curcas]
5 Hb_000720_090 0.1642028498 transcription factor TF Family: MYB myb, putative [Ricinus communis]
6 Hb_003086_010 0.1703320781 - - hypothetical protein JCGZ_06093 [Jatropha curcas]
7 Hb_172426_050 0.1719844319 - - PREDICTED: uncharacterized protein LOC105634266 [Jatropha curcas]
8 Hb_001414_020 0.1743095209 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
9 Hb_164926_040 0.1751332414 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
10 Hb_000085_290 0.1792138395 - - PREDICTED: putative MO25-like protein At5g47540 [Jatropha curcas]
11 Hb_002739_040 0.1851908355 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
12 Hb_002186_070 0.186743967 - - kinase, putative [Ricinus communis]
13 Hb_000116_590 0.1902751611 - - PREDICTED: splicing factor, suppressor of white-apricot homolog [Malus domestica]
14 Hb_004545_070 0.1961211706 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
15 Hb_003972_060 0.1970977003 - - PREDICTED: UDP-arabinopyranose mutase 3 [Populus euphratica]
16 Hb_002835_350 0.200385881 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
17 Hb_002471_260 0.2007206054 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105634154 [Jatropha curcas]
18 Hb_001252_070 0.20186789 - - hypothetical protein JCGZ_01385 [Jatropha curcas]
19 Hb_006141_030 0.2077356878 - - -
20 Hb_002025_350 0.2083642444 - - PREDICTED: glutamate decarboxylase 4 [Jatropha curcas]

Gene co-expression network

sample Hb_021409_140 Hb_021409_140 Hb_000186_290 Hb_000186_290 Hb_021409_140--Hb_000186_290 Hb_000116_120 Hb_000116_120 Hb_021409_140--Hb_000116_120 Hb_000707_010 Hb_000707_010 Hb_021409_140--Hb_000707_010 Hb_000720_090 Hb_000720_090 Hb_021409_140--Hb_000720_090 Hb_003086_010 Hb_003086_010 Hb_021409_140--Hb_003086_010 Hb_172426_050 Hb_172426_050 Hb_021409_140--Hb_172426_050 Hb_078081_010 Hb_078081_010 Hb_000186_290--Hb_078081_010 Hb_002739_040 Hb_002739_040 Hb_000186_290--Hb_002739_040 Hb_164926_040 Hb_164926_040 Hb_000186_290--Hb_164926_040 Hb_000186_290--Hb_000116_120 Hb_004346_010 Hb_004346_010 Hb_000186_290--Hb_004346_010 Hb_000116_120--Hb_003086_010 Hb_000116_120--Hb_078081_010 Hb_000653_010 Hb_000653_010 Hb_000116_120--Hb_000653_010 Hb_001474_010 Hb_001474_010 Hb_000116_120--Hb_001474_010 Hb_000707_010--Hb_000720_090 Hb_134911_010 Hb_134911_010 Hb_000707_010--Hb_134911_010 Hb_000077_400 Hb_000077_400 Hb_000707_010--Hb_000077_400 Hb_000042_380 Hb_000042_380 Hb_000707_010--Hb_000042_380 Hb_001439_040 Hb_001439_040 Hb_000707_010--Hb_001439_040 Hb_000625_030 Hb_000625_030 Hb_000720_090--Hb_000625_030 Hb_008749_020 Hb_008749_020 Hb_000720_090--Hb_008749_020 Hb_000720_090--Hb_000042_380 Hb_002527_060 Hb_002527_060 Hb_000720_090--Hb_002527_060 Hb_008695_150 Hb_008695_150 Hb_000720_090--Hb_008695_150 Hb_003086_010--Hb_172426_050 Hb_003086_010--Hb_000720_090 Hb_003086_010--Hb_078081_010 Hb_001405_150 Hb_001405_150 Hb_003086_010--Hb_001405_150 Hb_172426_050--Hb_000186_290 Hb_001287_060 Hb_001287_060 Hb_172426_050--Hb_001287_060 Hb_004324_030 Hb_004324_030 Hb_172426_050--Hb_004324_030 Hb_172426_050--Hb_002739_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.205866 0.747266 3.64776 5.15171 0.0983356 0.0611366
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.294402 1.75392 0.0628586 9.98698 2.17199

CAGE analysis