Hb_001405_150

Information

Type -
Description -
Location Contig1405: 191846-194194
Sequence    

Annotation

kegg
ID rcu:RCOM_0593520
description hypothetical protein
nr
ID XP_012086429.1
description PREDICTED: protein At-4/1 [Jatropha curcas]
swissprot
ID Q1PE49
description Protein At-4/1 OS=Arabidopsis thaliana GN=At4g26020 PE=1 SV=1
trembl
ID A0A067JSM7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22520 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10975: 192663-193521
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001405_150 0.0 - - PREDICTED: protein At-4/1 [Jatropha curcas]
2 Hb_000034_030 0.1333018658 - - protein phosphatase 2c, putative [Ricinus communis]
3 Hb_001006_280 0.1442795426 - - PREDICTED: glutamate decarboxylase 4 [Jatropha curcas]
4 Hb_002025_350 0.1477267554 - - PREDICTED: glutamate decarboxylase 4 [Jatropha curcas]
5 Hb_001024_030 0.155444834 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X1 [Jatropha curcas]
6 Hb_001018_080 0.1577599385 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000421_270 0.1642377355 transcription factor TF Family: LOB LOB domain-containing protein 1 [Theobroma cacao]
8 Hb_000116_590 0.1703678519 - - PREDICTED: splicing factor, suppressor of white-apricot homolog [Malus domestica]
9 Hb_011200_020 0.1709152207 - - aldo-keto reductase, putative [Ricinus communis]
10 Hb_038670_010 0.1724085762 - - Major allergen Pru ar, putative [Ricinus communis]
11 Hb_003086_010 0.1727488231 - - hypothetical protein JCGZ_06093 [Jatropha curcas]
12 Hb_000556_180 0.1772845451 - - hypothetical protein POPTR_0014s06690g [Populus trichocarpa]
13 Hb_003987_030 0.1775448021 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
14 Hb_000963_200 0.1779344285 - - beta-galactosidase, putative [Ricinus communis]
15 Hb_000227_370 0.1810312979 - - sugar transporter, putative [Ricinus communis]
16 Hb_000236_050 0.1811749023 - - phosphate transporter [Manihot esculenta]
17 Hb_008899_030 0.1829158643 - - Lipase class 3-related protein, putative [Theobroma cacao]
18 Hb_001832_050 0.1839984929 - - PREDICTED: cytokinin dehydrogenase 3 [Jatropha curcas]
19 Hb_011472_020 0.1898629706 - - PREDICTED: mucin-17-like [Jatropha curcas]
20 Hb_011537_020 0.190223211 - - PREDICTED: uncharacterized serine-rich protein C215.13-like [Jatropha curcas]

Gene co-expression network

sample Hb_001405_150 Hb_001405_150 Hb_000034_030 Hb_000034_030 Hb_001405_150--Hb_000034_030 Hb_001006_280 Hb_001006_280 Hb_001405_150--Hb_001006_280 Hb_002025_350 Hb_002025_350 Hb_001405_150--Hb_002025_350 Hb_001024_030 Hb_001024_030 Hb_001405_150--Hb_001024_030 Hb_001018_080 Hb_001018_080 Hb_001405_150--Hb_001018_080 Hb_000421_270 Hb_000421_270 Hb_001405_150--Hb_000421_270 Hb_000034_030--Hb_001006_280 Hb_000963_200 Hb_000963_200 Hb_000034_030--Hb_000963_200 Hb_000236_050 Hb_000236_050 Hb_000034_030--Hb_000236_050 Hb_038670_010 Hb_038670_010 Hb_000034_030--Hb_038670_010 Hb_005237_040 Hb_005237_040 Hb_000034_030--Hb_005237_040 Hb_001006_280--Hb_038670_010 Hb_043768_010 Hb_043768_010 Hb_001006_280--Hb_043768_010 Hb_000720_210 Hb_000720_210 Hb_001006_280--Hb_000720_210 Hb_001365_050 Hb_001365_050 Hb_001006_280--Hb_001365_050 Hb_002025_350--Hb_000421_270 Hb_032631_050 Hb_032631_050 Hb_002025_350--Hb_032631_050 Hb_000227_370 Hb_000227_370 Hb_002025_350--Hb_000227_370 Hb_029584_090 Hb_029584_090 Hb_002025_350--Hb_029584_090 Hb_000005_230 Hb_000005_230 Hb_002025_350--Hb_000005_230 Hb_031042_030 Hb_031042_030 Hb_001024_030--Hb_031042_030 Hb_000254_040 Hb_000254_040 Hb_001024_030--Hb_000254_040 Hb_002686_390 Hb_002686_390 Hb_001024_030--Hb_002686_390 Hb_011200_020 Hb_011200_020 Hb_001024_030--Hb_011200_020 Hb_002200_060 Hb_002200_060 Hb_001024_030--Hb_002200_060 Hb_011063_060 Hb_011063_060 Hb_001024_030--Hb_011063_060 Hb_011537_020 Hb_011537_020 Hb_001018_080--Hb_011537_020 Hb_002307_010 Hb_002307_010 Hb_001018_080--Hb_002307_010 Hb_008899_030 Hb_008899_030 Hb_001018_080--Hb_008899_030 Hb_003842_010 Hb_003842_010 Hb_001018_080--Hb_003842_010 Hb_002811_020 Hb_002811_020 Hb_001018_080--Hb_002811_020 Hb_000739_160 Hb_000739_160 Hb_001018_080--Hb_000739_160 Hb_000421_270--Hb_032631_050 Hb_000116_590 Hb_000116_590 Hb_000421_270--Hb_000116_590 Hb_000421_270--Hb_011200_020 Hb_000421_270--Hb_029584_090 Hb_000421_270--Hb_000963_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.385647 0.407937 0.300484 0.027245 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0668214 0.105084 0 1.1056 0.2111

CAGE analysis