Hb_000227_370

Information

Type -
Description -
Location Contig227: 314633-318474
Sequence    

Annotation

kegg
ID rcu:RCOM_0914040
description sugar transporter, putative (EC:1.3.1.74)
nr
ID XP_002517216.1
description sugar transporter, putative [Ricinus communis]
swissprot
ID Q94AZ2
description Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2
trembl
ID B9RTZ7
description Sugar transporter, putative OS=Ricinus communis GN=RCOM_0914040 PE=3 SV=1
Gene Ontology
ID GO:0009506
description sugar transport protein 13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23649: 314592-318536 , PASA_asmbl_23650: 316026-316267
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_370 0.0 - - sugar transporter, putative [Ricinus communis]
2 Hb_000009_130 0.1259858835 - - hypothetical protein POPTR_0007s12410g [Populus trichocarpa]
3 Hb_002025_350 0.1415285642 - - PREDICTED: glutamate decarboxylase 4 [Jatropha curcas]
4 Hb_162286_030 0.1440239774 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
5 Hb_002110_060 0.145107453 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
6 Hb_004657_040 0.1464868804 transcription factor TF Family: WRKY WRKY transcription factor 15 family protein [Populus trichocarpa]
7 Hb_008695_130 0.1477178692 - - conserved hypothetical protein [Ricinus communis]
8 Hb_010174_170 0.149013271 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X1 [Jatropha curcas]
9 Hb_004129_110 0.1502606393 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
10 Hb_001454_410 0.1538186496 - - PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]
11 Hb_001723_070 0.1551576625 - - PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]
12 Hb_000914_130 0.1554895957 - - copper-transporting atpase p-type, putative [Ricinus communis]
13 Hb_002686_390 0.1579237072 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
14 Hb_006711_020 0.1623843506 - - hypothetical protein JCGZ_07258 [Jatropha curcas]
15 Hb_000963_200 0.1656385077 - - beta-galactosidase, putative [Ricinus communis]
16 Hb_005237_040 0.1663612286 - - PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
17 Hb_008215_010 0.167127308 - - conserved hypothetical protein [Ricinus communis]
18 Hb_008554_090 0.1681018319 - - zinc finger protein, putative [Ricinus communis]
19 Hb_029584_090 0.1689621628 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
20 Hb_011472_020 0.1699058021 - - PREDICTED: mucin-17-like [Jatropha curcas]

Gene co-expression network

sample Hb_000227_370 Hb_000227_370 Hb_000009_130 Hb_000009_130 Hb_000227_370--Hb_000009_130 Hb_002025_350 Hb_002025_350 Hb_000227_370--Hb_002025_350 Hb_162286_030 Hb_162286_030 Hb_000227_370--Hb_162286_030 Hb_002110_060 Hb_002110_060 Hb_000227_370--Hb_002110_060 Hb_004657_040 Hb_004657_040 Hb_000227_370--Hb_004657_040 Hb_008695_130 Hb_008695_130 Hb_000227_370--Hb_008695_130 Hb_166009_010 Hb_166009_010 Hb_000009_130--Hb_166009_010 Hb_004129_110 Hb_004129_110 Hb_000009_130--Hb_004129_110 Hb_011472_020 Hb_011472_020 Hb_000009_130--Hb_011472_020 Hb_010519_020 Hb_010519_020 Hb_000009_130--Hb_010519_020 Hb_001421_010 Hb_001421_010 Hb_000009_130--Hb_001421_010 Hb_000022_280 Hb_000022_280 Hb_000009_130--Hb_000022_280 Hb_000421_270 Hb_000421_270 Hb_002025_350--Hb_000421_270 Hb_032631_050 Hb_032631_050 Hb_002025_350--Hb_032631_050 Hb_029584_090 Hb_029584_090 Hb_002025_350--Hb_029584_090 Hb_000005_230 Hb_000005_230 Hb_002025_350--Hb_000005_230 Hb_001405_150 Hb_001405_150 Hb_002025_350--Hb_001405_150 Hb_001723_070 Hb_001723_070 Hb_162286_030--Hb_001723_070 Hb_001621_020 Hb_001621_020 Hb_162286_030--Hb_001621_020 Hb_162286_030--Hb_002110_060 Hb_162286_030--Hb_000009_130 Hb_010174_170 Hb_010174_170 Hb_162286_030--Hb_010174_170 Hb_008215_010 Hb_008215_010 Hb_162286_030--Hb_008215_010 Hb_008554_090 Hb_008554_090 Hb_002110_060--Hb_008554_090 Hb_009070_030 Hb_009070_030 Hb_002110_060--Hb_009070_030 Hb_002110_060--Hb_000009_130 Hb_005730_070 Hb_005730_070 Hb_002110_060--Hb_005730_070 Hb_001454_290 Hb_001454_290 Hb_002110_060--Hb_001454_290 Hb_000181_160 Hb_000181_160 Hb_004657_040--Hb_000181_160 Hb_000625_060 Hb_000625_060 Hb_004657_040--Hb_000625_060 Hb_002686_390 Hb_002686_390 Hb_004657_040--Hb_002686_390 Hb_001408_050 Hb_001408_050 Hb_004657_040--Hb_001408_050 Hb_001514_210 Hb_001514_210 Hb_004657_040--Hb_001514_210 Hb_009823_010 Hb_009823_010 Hb_004657_040--Hb_009823_010 Hb_001221_480 Hb_001221_480 Hb_008695_130--Hb_001221_480 Hb_002750_010 Hb_002750_010 Hb_008695_130--Hb_002750_010 Hb_003987_030 Hb_003987_030 Hb_008695_130--Hb_003987_030 Hb_001454_410 Hb_001454_410 Hb_008695_130--Hb_001454_410 Hb_003807_020 Hb_003807_020 Hb_008695_130--Hb_003807_020 Hb_000335_050 Hb_000335_050 Hb_008695_130--Hb_000335_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.8438 4.89061 3.82561 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.325746 0.341718 0.403018 12.5889 0.852991

CAGE analysis