Hb_000421_270

Information

Type transcription factor
Description TF Family: LOB
Location Contig421: 200284-201724
Sequence    

Annotation

kegg
ID tcc:TCM_041094
description LOB domain-containing protein 1
nr
ID XP_007015486.1
description LOB domain-containing protein 1 [Theobroma cacao]
swissprot
ID Q9LQR0
description LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1
trembl
ID A0A061GTD1
description LOB domain-containing protein 1 OS=Theobroma cacao GN=TCM_041094 PE=4 SV=1
Gene Ontology
ID GO:0004088
description lob domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41628: 200312-202060
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000421_270 0.0 transcription factor TF Family: LOB LOB domain-containing protein 1 [Theobroma cacao]
2 Hb_002025_350 0.0948271118 - - PREDICTED: glutamate decarboxylase 4 [Jatropha curcas]
3 Hb_032631_050 0.1051963702 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
4 Hb_000116_590 0.1351664223 - - PREDICTED: splicing factor, suppressor of white-apricot homolog [Malus domestica]
5 Hb_011200_020 0.1372891779 - - aldo-keto reductase, putative [Ricinus communis]
6 Hb_029584_090 0.1462963241 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
7 Hb_000963_200 0.1600370112 - - beta-galactosidase, putative [Ricinus communis]
8 Hb_001405_150 0.1642377355 - - PREDICTED: protein At-4/1 [Jatropha curcas]
9 Hb_001348_210 0.1740085027 - - defensin protein precursor [Capsicum annuum]
10 Hb_001024_030 0.1745248276 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X1 [Jatropha curcas]
11 Hb_004657_040 0.175142575 transcription factor TF Family: WRKY WRKY transcription factor 15 family protein [Populus trichocarpa]
12 Hb_000227_370 0.1769358909 - - sugar transporter, putative [Ricinus communis]
13 Hb_000005_230 0.1796972628 - - hypothetical protein POPTR_0009s01160g [Populus trichocarpa]
14 Hb_002835_350 0.1802389811 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
15 Hb_001287_060 0.1810596146 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
16 Hb_006788_010 0.1875530424 - - PREDICTED: calcium-transporting ATPase 12, plasma membrane-type [Jatropha curcas]
17 Hb_011633_040 0.1880049918 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
18 Hb_000853_060 0.1908539673 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
19 Hb_000181_160 0.1920758009 - - PREDICTED: uncharacterized protein LOC105637575 isoform X2 [Jatropha curcas]
20 Hb_029921_030 0.1927691614 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000421_270 Hb_000421_270 Hb_002025_350 Hb_002025_350 Hb_000421_270--Hb_002025_350 Hb_032631_050 Hb_032631_050 Hb_000421_270--Hb_032631_050 Hb_000116_590 Hb_000116_590 Hb_000421_270--Hb_000116_590 Hb_011200_020 Hb_011200_020 Hb_000421_270--Hb_011200_020 Hb_029584_090 Hb_029584_090 Hb_000421_270--Hb_029584_090 Hb_000963_200 Hb_000963_200 Hb_000421_270--Hb_000963_200 Hb_002025_350--Hb_032631_050 Hb_000227_370 Hb_000227_370 Hb_002025_350--Hb_000227_370 Hb_002025_350--Hb_029584_090 Hb_000005_230 Hb_000005_230 Hb_002025_350--Hb_000005_230 Hb_001405_150 Hb_001405_150 Hb_002025_350--Hb_001405_150 Hb_001348_210 Hb_001348_210 Hb_032631_050--Hb_001348_210 Hb_032631_050--Hb_011200_020 Hb_032631_050--Hb_000963_200 Hb_032631_050--Hb_029584_090 Hb_000116_590--Hb_002025_350 Hb_002835_350 Hb_002835_350 Hb_000116_590--Hb_002835_350 Hb_000116_590--Hb_001405_150 Hb_000116_590--Hb_032631_050 Hb_003592_030 Hb_003592_030 Hb_000116_590--Hb_003592_030 Hb_000098_310 Hb_000098_310 Hb_011200_020--Hb_000098_310 Hb_001504_220 Hb_001504_220 Hb_011200_020--Hb_001504_220 Hb_032225_040 Hb_032225_040 Hb_011200_020--Hb_032225_040 Hb_031042_030 Hb_031042_030 Hb_011200_020--Hb_031042_030 Hb_029584_090--Hb_000963_200 Hb_004495_020 Hb_004495_020 Hb_029584_090--Hb_004495_020 Hb_001341_200 Hb_001341_200 Hb_029584_090--Hb_001341_200 Hb_000034_030 Hb_000034_030 Hb_000963_200--Hb_000034_030 Hb_006594_060 Hb_006594_060 Hb_000963_200--Hb_006594_060 Hb_003453_030 Hb_003453_030 Hb_000963_200--Hb_003453_030 Hb_000963_200--Hb_011200_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.189901 4.10049 3.73888 3.97059 0 0.192164
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.917311 1.9011 0.35004 12.8954 1.1637

CAGE analysis