Hb_000034_030

Information

Type -
Description -
Location Contig34: 83993-86181
Sequence    

Annotation

kegg
ID rcu:RCOM_0741970
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_002525508.1
description protein phosphatase 2c, putative [Ricinus communis]
swissprot
ID Q8RX37
description Probable protein phosphatase 2C 2 OS=Arabidopsis thaliana GN=At1g07160 PE=2 SV=1
trembl
ID B9SHN9
description Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_0741970 PE=4 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 74

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000034_030 0.0 - - protein phosphatase 2c, putative [Ricinus communis]
2 Hb_001006_280 0.0930454237 - - PREDICTED: glutamate decarboxylase 4 [Jatropha curcas]
3 Hb_000963_200 0.1137676085 - - beta-galactosidase, putative [Ricinus communis]
4 Hb_000236_050 0.1147940077 - - phosphate transporter [Manihot esculenta]
5 Hb_038670_010 0.1227723257 - - Major allergen Pru ar, putative [Ricinus communis]
6 Hb_005237_040 0.1273322522 - - PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
7 Hb_001405_150 0.1333018658 - - PREDICTED: protein At-4/1 [Jatropha curcas]
8 Hb_014037_010 0.1337118336 - - PREDICTED: uncharacterized protein LOC105641871 [Jatropha curcas]
9 Hb_003987_030 0.135722382 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
10 Hb_009785_010 0.1402434018 - - PREDICTED: uncharacterized protein LOC105648749 [Jatropha curcas]
11 Hb_043768_010 0.1453319206 - - PREDICTED: heat stress transcription factor A-4a-like [Jatropha curcas]
12 Hb_004884_200 0.146135899 - - PREDICTED: ferritin-3, chloroplastic [Jatropha curcas]
13 Hb_000317_220 0.1467200677 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000029_370 0.1536155281 - - multidrug resistance pump, putative [Ricinus communis]
15 Hb_006594_060 0.1562859207 transcription factor TF Family: HSF PREDICTED: heat shock factor protein HSF24 [Jatropha curcas]
16 Hb_000403_110 0.1568950439 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 51 [Jatropha curcas]
17 Hb_175758_010 0.1605501182 - - PREDICTED: aspartic proteinase A1-like isoform X2 [Jatropha curcas]
18 Hb_008783_020 0.1644034666 - - hypothetical protein JCGZ_21284 [Jatropha curcas]
19 Hb_002686_390 0.1653399537 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
20 Hb_001421_010 0.1658579716 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000034_030 Hb_000034_030 Hb_001006_280 Hb_001006_280 Hb_000034_030--Hb_001006_280 Hb_000963_200 Hb_000963_200 Hb_000034_030--Hb_000963_200 Hb_000236_050 Hb_000236_050 Hb_000034_030--Hb_000236_050 Hb_038670_010 Hb_038670_010 Hb_000034_030--Hb_038670_010 Hb_005237_040 Hb_005237_040 Hb_000034_030--Hb_005237_040 Hb_001405_150 Hb_001405_150 Hb_000034_030--Hb_001405_150 Hb_001006_280--Hb_038670_010 Hb_001006_280--Hb_001405_150 Hb_043768_010 Hb_043768_010 Hb_001006_280--Hb_043768_010 Hb_000720_210 Hb_000720_210 Hb_001006_280--Hb_000720_210 Hb_001365_050 Hb_001365_050 Hb_001006_280--Hb_001365_050 Hb_029584_090 Hb_029584_090 Hb_000963_200--Hb_029584_090 Hb_006594_060 Hb_006594_060 Hb_000963_200--Hb_006594_060 Hb_032631_050 Hb_032631_050 Hb_000963_200--Hb_032631_050 Hb_003453_030 Hb_003453_030 Hb_000963_200--Hb_003453_030 Hb_011200_020 Hb_011200_020 Hb_000963_200--Hb_011200_020 Hb_000236_050--Hb_005237_040 Hb_009785_010 Hb_009785_010 Hb_000236_050--Hb_009785_010 Hb_014037_010 Hb_014037_010 Hb_000236_050--Hb_014037_010 Hb_004884_200 Hb_004884_200 Hb_000236_050--Hb_004884_200 Hb_005211_090 Hb_005211_090 Hb_000236_050--Hb_005211_090 Hb_002391_350 Hb_002391_350 Hb_000236_050--Hb_002391_350 Hb_008783_020 Hb_008783_020 Hb_038670_010--Hb_008783_020 Hb_000521_360 Hb_000521_360 Hb_038670_010--Hb_000521_360 Hb_005276_220 Hb_005276_220 Hb_038670_010--Hb_005276_220 Hb_000403_110 Hb_000403_110 Hb_038670_010--Hb_000403_110 Hb_005237_040--Hb_009785_010 Hb_005237_040--Hb_014037_010 Hb_005237_040--Hb_004884_200 Hb_006711_020 Hb_006711_020 Hb_005237_040--Hb_006711_020 Hb_005237_040--Hb_002391_350 Hb_002025_350 Hb_002025_350 Hb_001405_150--Hb_002025_350 Hb_001024_030 Hb_001024_030 Hb_001405_150--Hb_001024_030 Hb_001018_080 Hb_001018_080 Hb_001405_150--Hb_001018_080 Hb_000421_270 Hb_000421_270 Hb_001405_150--Hb_000421_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.25162 0.1109 0.137326 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0335739 0.0264126 0 0.474853 0.110212

CAGE analysis