Hb_002025_350

Information

Type -
Description -
Location Contig2025: 285087-287370
Sequence    

Annotation

kegg
ID pop:POPTR_0008s14070g
description POPTRDRAFT_766241; glutamate decarboxylase family protein
nr
ID XP_012072404.1
description PREDICTED: glutamate decarboxylase 4 [Jatropha curcas]
swissprot
ID Q9ZPS3
description Glutamate decarboxylase 4 OS=Arabidopsis thaliana GN=GAD4 PE=1 SV=1
trembl
ID A0A067KTE0
description Glutamate decarboxylase OS=Jatropha curcas GN=JCGZ_04841 PE=3 SV=1
Gene Ontology
ID GO:0004351
description glutamate decarboxylase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20605: 285411-286168 , PASA_asmbl_20606: 286180-286855
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002025_350 0.0 - - PREDICTED: glutamate decarboxylase 4 [Jatropha curcas]
2 Hb_000421_270 0.0948271118 transcription factor TF Family: LOB LOB domain-containing protein 1 [Theobroma cacao]
3 Hb_032631_050 0.1411428826 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
4 Hb_000227_370 0.1415285642 - - sugar transporter, putative [Ricinus communis]
5 Hb_029584_090 0.1475225348 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
6 Hb_000005_230 0.1476275809 - - hypothetical protein POPTR_0009s01160g [Populus trichocarpa]
7 Hb_001405_150 0.1477267554 - - PREDICTED: protein At-4/1 [Jatropha curcas]
8 Hb_006788_010 0.1484235958 - - PREDICTED: calcium-transporting ATPase 12, plasma membrane-type [Jatropha curcas]
9 Hb_000116_590 0.1505616465 - - PREDICTED: splicing factor, suppressor of white-apricot homolog [Malus domestica]
10 Hb_011200_020 0.1514496749 - - aldo-keto reductase, putative [Ricinus communis]
11 Hb_000963_200 0.1606187449 - - beta-galactosidase, putative [Ricinus communis]
12 Hb_001287_060 0.1753087768 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
13 Hb_000085_290 0.1766765377 - - PREDICTED: putative MO25-like protein At5g47540 [Jatropha curcas]
14 Hb_002835_350 0.1790122156 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
15 Hb_000556_180 0.1792659411 - - hypothetical protein POPTR_0014s06690g [Populus trichocarpa]
16 Hb_000834_040 0.1799526685 - - PREDICTED: ras-related protein Rab7 [Cucumis melo]
17 Hb_001024_030 0.1812714718 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X1 [Jatropha curcas]
18 Hb_025526_080 0.1824553235 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Vitis vinifera]
19 Hb_000005_340 0.1833932756 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
20 Hb_004495_020 0.1839562911 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]

Gene co-expression network

sample Hb_002025_350 Hb_002025_350 Hb_000421_270 Hb_000421_270 Hb_002025_350--Hb_000421_270 Hb_032631_050 Hb_032631_050 Hb_002025_350--Hb_032631_050 Hb_000227_370 Hb_000227_370 Hb_002025_350--Hb_000227_370 Hb_029584_090 Hb_029584_090 Hb_002025_350--Hb_029584_090 Hb_000005_230 Hb_000005_230 Hb_002025_350--Hb_000005_230 Hb_001405_150 Hb_001405_150 Hb_002025_350--Hb_001405_150 Hb_000421_270--Hb_032631_050 Hb_000116_590 Hb_000116_590 Hb_000421_270--Hb_000116_590 Hb_011200_020 Hb_011200_020 Hb_000421_270--Hb_011200_020 Hb_000421_270--Hb_029584_090 Hb_000963_200 Hb_000963_200 Hb_000421_270--Hb_000963_200 Hb_001348_210 Hb_001348_210 Hb_032631_050--Hb_001348_210 Hb_032631_050--Hb_011200_020 Hb_032631_050--Hb_000963_200 Hb_032631_050--Hb_029584_090 Hb_000009_130 Hb_000009_130 Hb_000227_370--Hb_000009_130 Hb_162286_030 Hb_162286_030 Hb_000227_370--Hb_162286_030 Hb_002110_060 Hb_002110_060 Hb_000227_370--Hb_002110_060 Hb_004657_040 Hb_004657_040 Hb_000227_370--Hb_004657_040 Hb_008695_130 Hb_008695_130 Hb_000227_370--Hb_008695_130 Hb_029584_090--Hb_000963_200 Hb_004495_020 Hb_004495_020 Hb_029584_090--Hb_004495_020 Hb_001341_200 Hb_001341_200 Hb_029584_090--Hb_001341_200 Hb_006788_010 Hb_006788_010 Hb_000005_230--Hb_006788_010 Hb_002597_010 Hb_002597_010 Hb_000005_230--Hb_002597_010 Hb_006618_080 Hb_006618_080 Hb_000005_230--Hb_006618_080 Hb_000032_560 Hb_000032_560 Hb_000005_230--Hb_000032_560 Hb_007313_010 Hb_007313_010 Hb_000005_230--Hb_007313_010 Hb_000347_230 Hb_000347_230 Hb_000005_230--Hb_000347_230 Hb_000034_030 Hb_000034_030 Hb_001405_150--Hb_000034_030 Hb_001006_280 Hb_001006_280 Hb_001405_150--Hb_001006_280 Hb_001024_030 Hb_001024_030 Hb_001405_150--Hb_001024_030 Hb_001018_080 Hb_001018_080 Hb_001405_150--Hb_001018_080 Hb_001405_150--Hb_000421_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0494521 5.15324 6.09534 6.06717 0.0495393 0.0677451
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.703513 1.83761 0.95988 17.2302 2.04534

CAGE analysis