Hb_001348_210

Information

Type -
Description -
Location Contig1348: 163002-163565
Sequence    

Annotation

kegg
ID fve:101306716
description defensin-like protein 2-like
nr
ID AAL35366.1
description defensin protein precursor [Capsicum annuum]
swissprot
ID A3FPF2
description Defensin-like protein OS=Nelumbo nucifera PE=3 SV=1
trembl
ID Q8W4V6
description Defensin OS=Capsicum annuum PE=2 SV=1
Gene Ontology
ID GO:0005576
description defensin ec-amp-d2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09831: 162882-163620
cDNA
(Sanger)
(ID:Location)		 003_K09.ab1: 162999-163560 , 004_C20.ab1: 162973-163567 , 004_I08.ab1: 163017-163571 , 005_A17.ab1: 162880-163555 , 005_G12.ab1: 162999-163560 , 008_G20.ab1: 162996-163560 , 008_I16.ab1: 162880-163555 , 009_P13.ab1: 162996-163571 , 014_L10.ab1: 162996-163571 , 020_M06.ab1: 162971-163571 , 020_N24.ab1: 162996-163560 , 021_H22.ab1: 162998-163571 , 038_K11.ab1: 162972-163571 , 041_O09.ab1: 162972-163572 , 047_M23.ab1: 162998-163571 , 050_D06.ab1: 162971-163571

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001348_210 0.0 - - defensin protein precursor [Capsicum annuum]
2 Hb_032631_050 0.1355450588 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
3 Hb_000421_270 0.1740085027 transcription factor TF Family: LOB LOB domain-containing protein 1 [Theobroma cacao]
4 Hb_000181_160 0.1744911958 - - PREDICTED: uncharacterized protein LOC105637575 isoform X2 [Jatropha curcas]
5 Hb_003602_070 0.1853043943 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
6 Hb_000116_590 0.1964923776 - - PREDICTED: splicing factor, suppressor of white-apricot homolog [Malus domestica]
7 Hb_000098_310 0.1981394193 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
8 Hb_011200_020 0.1986871102 - - aldo-keto reductase, putative [Ricinus communis]
9 Hb_000029_370 0.2002260236 - - multidrug resistance pump, putative [Ricinus communis]
10 Hb_008406_010 0.2023025935 - - PREDICTED: tyrosine aminotransferase-like [Populus euphratica]
11 Hb_000152_810 0.205529383 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
12 Hb_001678_030 0.2068705275 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
13 Hb_002835_350 0.207404028 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
14 Hb_000915_070 0.2093196373 - - ATP binding protein, putative [Ricinus communis]
15 Hb_004657_040 0.2138407665 transcription factor TF Family: WRKY WRKY transcription factor 15 family protein [Populus trichocarpa]
16 Hb_031336_020 0.2152618456 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000753_250 0.2157271997 - - PREDICTED: uncharacterized protein LOC105640661 [Jatropha curcas]
18 Hb_000256_100 0.2163379763 transcription factor TF Family: ERF PPLZ02 family protein [Populus trichocarpa]
19 Hb_001268_330 0.2174672734 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
20 Hb_000300_590 0.2193668769 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Jatropha curcas]

Gene co-expression network

sample Hb_001348_210 Hb_001348_210 Hb_032631_050 Hb_032631_050 Hb_001348_210--Hb_032631_050 Hb_000421_270 Hb_000421_270 Hb_001348_210--Hb_000421_270 Hb_000181_160 Hb_000181_160 Hb_001348_210--Hb_000181_160 Hb_003602_070 Hb_003602_070 Hb_001348_210--Hb_003602_070 Hb_000116_590 Hb_000116_590 Hb_001348_210--Hb_000116_590 Hb_000098_310 Hb_000098_310 Hb_001348_210--Hb_000098_310 Hb_032631_050--Hb_000421_270 Hb_011200_020 Hb_011200_020 Hb_032631_050--Hb_011200_020 Hb_000963_200 Hb_000963_200 Hb_032631_050--Hb_000963_200 Hb_002025_350 Hb_002025_350 Hb_032631_050--Hb_002025_350 Hb_029584_090 Hb_029584_090 Hb_032631_050--Hb_029584_090 Hb_000421_270--Hb_002025_350 Hb_000421_270--Hb_000116_590 Hb_000421_270--Hb_011200_020 Hb_000421_270--Hb_029584_090 Hb_000421_270--Hb_000963_200 Hb_004657_040 Hb_004657_040 Hb_000181_160--Hb_004657_040 Hb_001408_050 Hb_001408_050 Hb_000181_160--Hb_001408_050 Hb_009823_010 Hb_009823_010 Hb_000181_160--Hb_009823_010 Hb_001454_410 Hb_001454_410 Hb_000181_160--Hb_001454_410 Hb_001221_480 Hb_001221_480 Hb_000181_160--Hb_001221_480 Hb_000181_160--Hb_000098_310 Hb_000300_590 Hb_000300_590 Hb_003602_070--Hb_000300_590 Hb_000915_070 Hb_000915_070 Hb_003602_070--Hb_000915_070 Hb_000580_070 Hb_000580_070 Hb_003602_070--Hb_000580_070 Hb_001678_030 Hb_001678_030 Hb_003602_070--Hb_001678_030 Hb_003602_070--Hb_000181_160 Hb_002304_140 Hb_002304_140 Hb_003602_070--Hb_002304_140 Hb_000116_590--Hb_002025_350 Hb_002835_350 Hb_002835_350 Hb_000116_590--Hb_002835_350 Hb_001405_150 Hb_001405_150 Hb_000116_590--Hb_001405_150 Hb_000116_590--Hb_032631_050 Hb_003592_030 Hb_003592_030 Hb_000116_590--Hb_003592_030 Hb_000098_310--Hb_009823_010 Hb_000098_310--Hb_011200_020 Hb_003576_050 Hb_003576_050 Hb_000098_310--Hb_003576_050 Hb_000098_310--Hb_001408_050 Hb_031042_030 Hb_031042_030 Hb_000098_310--Hb_031042_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.4504 1102.11 551.673 956.851 67.8424 24.741
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
253.584 562.948 6.48255 4568.58 58.8637

CAGE analysis