Hb_003602_070

Information

Type transcription factor
Description TF Family: bHLH
Location Contig3602: 58075-59836
Sequence    

Annotation

kegg
ID rcu:RCOM_0481980
description DNA binding protein, putative
nr
ID XP_012068085.1
description PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
swissprot
ID Q9LSL1
description Transcription factor bHLH93 OS=Arabidopsis thaliana GN=BHLH93 PE=1 SV=1
trembl
ID A0A067KZB7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15934 PE=4 SV=1
Gene Ontology
ID GO:0016491
description transcription factor bhlh93-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37109: 58189-59768
cDNA
(Sanger)
(ID:Location)		 020_L04.ab1: 58189-59224 , 025_L08.ab1: 58189-59088

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003602_070 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
2 Hb_000300_590 0.1635104296 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Jatropha curcas]
3 Hb_000915_070 0.1730627906 - - ATP binding protein, putative [Ricinus communis]
4 Hb_000580_070 0.1754993301 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
5 Hb_001678_030 0.1774762572 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
6 Hb_000181_160 0.1830368578 - - PREDICTED: uncharacterized protein LOC105637575 isoform X2 [Jatropha curcas]
7 Hb_002304_140 0.184217771 - - ring finger protein, putative [Ricinus communis]
8 Hb_000029_370 0.1845701929 - - multidrug resistance pump, putative [Ricinus communis]
9 Hb_001348_210 0.1853043943 - - defensin protein precursor [Capsicum annuum]
10 Hb_000077_330 0.1906963144 - - PREDICTED: bifunctional epoxide hydrolase 2-like [Jatropha curcas]
11 Hb_001959_030 0.1919442159 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000753_250 0.191998444 - - PREDICTED: uncharacterized protein LOC105640661 [Jatropha curcas]
13 Hb_000098_310 0.1944179173 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
14 Hb_032050_050 0.1958454668 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
15 Hb_032631_050 0.1964111789 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
16 Hb_011200_020 0.1985412969 - - aldo-keto reductase, putative [Ricinus communis]
17 Hb_032225_040 0.1992291265 - - -
18 Hb_008406_010 0.2025257275 - - PREDICTED: tyrosine aminotransferase-like [Populus euphratica]
19 Hb_009823_010 0.2028070631 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
20 Hb_001268_330 0.2048151769 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003602_070 Hb_003602_070 Hb_000300_590 Hb_000300_590 Hb_003602_070--Hb_000300_590 Hb_000915_070 Hb_000915_070 Hb_003602_070--Hb_000915_070 Hb_000580_070 Hb_000580_070 Hb_003602_070--Hb_000580_070 Hb_001678_030 Hb_001678_030 Hb_003602_070--Hb_001678_030 Hb_000181_160 Hb_000181_160 Hb_003602_070--Hb_000181_160 Hb_002304_140 Hb_002304_140 Hb_003602_070--Hb_002304_140 Hb_116478_010 Hb_116478_010 Hb_000300_590--Hb_116478_010 Hb_032225_040 Hb_032225_040 Hb_000300_590--Hb_032225_040 Hb_000032_560 Hb_000032_560 Hb_000300_590--Hb_000032_560 Hb_000300_590--Hb_000580_070 Hb_002762_090 Hb_002762_090 Hb_000300_590--Hb_002762_090 Hb_025254_020 Hb_025254_020 Hb_000915_070--Hb_025254_020 Hb_001959_030 Hb_001959_030 Hb_000915_070--Hb_001959_030 Hb_000098_310 Hb_000098_310 Hb_000915_070--Hb_000098_310 Hb_009823_010 Hb_009823_010 Hb_000915_070--Hb_009823_010 Hb_002597_010 Hb_002597_010 Hb_000915_070--Hb_002597_010 Hb_000915_070--Hb_000580_070 Hb_000580_070--Hb_000032_560 Hb_018133_110 Hb_018133_110 Hb_000580_070--Hb_018133_110 Hb_002749_070 Hb_002749_070 Hb_000580_070--Hb_002749_070 Hb_000487_240 Hb_000487_240 Hb_000580_070--Hb_000487_240 Hb_000025_740 Hb_000025_740 Hb_000580_070--Hb_000025_740 Hb_032050_050 Hb_032050_050 Hb_000580_070--Hb_032050_050 Hb_000616_050 Hb_000616_050 Hb_001678_030--Hb_000616_050 Hb_001408_050 Hb_001408_050 Hb_001678_030--Hb_001408_050 Hb_000029_370 Hb_000029_370 Hb_001678_030--Hb_000029_370 Hb_001329_040 Hb_001329_040 Hb_001678_030--Hb_001329_040 Hb_001838_050 Hb_001838_050 Hb_001678_030--Hb_001838_050 Hb_001678_030--Hb_032050_050 Hb_004657_040 Hb_004657_040 Hb_000181_160--Hb_004657_040 Hb_000181_160--Hb_001408_050 Hb_000181_160--Hb_009823_010 Hb_001454_410 Hb_001454_410 Hb_000181_160--Hb_001454_410 Hb_001221_480 Hb_001221_480 Hb_000181_160--Hb_001221_480 Hb_000181_160--Hb_000098_310 Hb_001248_030 Hb_001248_030 Hb_002304_140--Hb_001248_030 Hb_007416_150 Hb_007416_150 Hb_002304_140--Hb_007416_150 Hb_004195_110 Hb_004195_110 Hb_002304_140--Hb_004195_110 Hb_002304_140--Hb_009823_010 Hb_000165_210 Hb_000165_210 Hb_002304_140--Hb_000165_210 Hb_002304_140--Hb_000098_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.01093 4.43526 1.73459 4.09971 0.223472 0.0702386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.9711 0.262825 0 21.0728 0.712989

CAGE analysis