Hb_032225_040

Information

Type -
Description -
Location Contig32225: 28267-28930
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34127: 27746-27910 , PASA_asmbl_34129: 28627-30145
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032225_040 0.0 - - -
2 Hb_011200_020 0.1283162328 - - aldo-keto reductase, putative [Ricinus communis]
3 Hb_000138_020 0.1570922723 - - PREDICTED: peroxidase A2-like [Jatropha curcas]
4 Hb_000098_310 0.1785240135 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
5 Hb_000300_590 0.1812984409 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Jatropha curcas]
6 Hb_002835_350 0.1862027115 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
7 Hb_032631_050 0.1865164099 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
8 Hb_001504_220 0.1900515396 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_003813_120 0.1921800333 - - zinc finger protein, putative [Ricinus communis]
10 Hb_000077_330 0.1971811995 - - PREDICTED: bifunctional epoxide hydrolase 2-like [Jatropha curcas]
11 Hb_000735_070 0.19771373 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
12 Hb_000653_010 0.1979772248 - - hypothetical protein CICLE_v10033238mg [Citrus clementina]
13 Hb_003602_070 0.1992291265 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
14 Hb_005181_180 0.1999166128 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000753_250 0.2005302783 - - PREDICTED: uncharacterized protein LOC105640661 [Jatropha curcas]
16 Hb_000165_210 0.2013415157 - - PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
17 Hb_000347_110 0.2013828726 - - BnaA05g25330D [Brassica napus]
18 Hb_000327_070 0.2021223635 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2 [Jatropha curcas]
19 Hb_002304_140 0.2041114055 - - ring finger protein, putative [Ricinus communis]
20 Hb_007919_040 0.20474092 - - PREDICTED: protein LYK5 [Jatropha curcas]

Gene co-expression network

sample Hb_032225_040 Hb_032225_040 Hb_011200_020 Hb_011200_020 Hb_032225_040--Hb_011200_020 Hb_000138_020 Hb_000138_020 Hb_032225_040--Hb_000138_020 Hb_000098_310 Hb_000098_310 Hb_032225_040--Hb_000098_310 Hb_000300_590 Hb_000300_590 Hb_032225_040--Hb_000300_590 Hb_002835_350 Hb_002835_350 Hb_032225_040--Hb_002835_350 Hb_032631_050 Hb_032631_050 Hb_032225_040--Hb_032631_050 Hb_011200_020--Hb_000098_310 Hb_001504_220 Hb_001504_220 Hb_011200_020--Hb_001504_220 Hb_031042_030 Hb_031042_030 Hb_011200_020--Hb_031042_030 Hb_011200_020--Hb_032631_050 Hb_000421_270 Hb_000421_270 Hb_011200_020--Hb_000421_270 Hb_000653_010 Hb_000653_010 Hb_000138_020--Hb_000653_010 Hb_001123_010 Hb_001123_010 Hb_000138_020--Hb_001123_010 Hb_033594_100 Hb_033594_100 Hb_000138_020--Hb_033594_100 Hb_000816_020 Hb_000816_020 Hb_000138_020--Hb_000816_020 Hb_003640_010 Hb_003640_010 Hb_000138_020--Hb_003640_010 Hb_009823_010 Hb_009823_010 Hb_000098_310--Hb_009823_010 Hb_003576_050 Hb_003576_050 Hb_000098_310--Hb_003576_050 Hb_000181_160 Hb_000181_160 Hb_000098_310--Hb_000181_160 Hb_001408_050 Hb_001408_050 Hb_000098_310--Hb_001408_050 Hb_000098_310--Hb_031042_030 Hb_003602_070 Hb_003602_070 Hb_000300_590--Hb_003602_070 Hb_116478_010 Hb_116478_010 Hb_000300_590--Hb_116478_010 Hb_000032_560 Hb_000032_560 Hb_000300_590--Hb_000032_560 Hb_000580_070 Hb_000580_070 Hb_000300_590--Hb_000580_070 Hb_002762_090 Hb_002762_090 Hb_000300_590--Hb_002762_090 Hb_006141_030 Hb_006141_030 Hb_002835_350--Hb_006141_030 Hb_002835_350--Hb_032631_050 Hb_002539_010 Hb_002539_010 Hb_002835_350--Hb_002539_010 Hb_000116_590 Hb_000116_590 Hb_002835_350--Hb_000116_590 Hb_002835_350--Hb_011200_020 Hb_002835_350--Hb_000098_310 Hb_032631_050--Hb_000421_270 Hb_001348_210 Hb_001348_210 Hb_032631_050--Hb_001348_210 Hb_000963_200 Hb_000963_200 Hb_032631_050--Hb_000963_200 Hb_002025_350 Hb_002025_350 Hb_032631_050--Hb_002025_350 Hb_029584_090 Hb_029584_090 Hb_032631_050--Hb_029584_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.77348 4.82886 2.05065 4.99177 0.170911 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.30299 1.26037 0.551492 19.1831 3.66157

CAGE analysis