Hb_000116_590

Information

Type -
Description -
Location Contig116: 516518-519085
Sequence    

Annotation

kegg
ID mdm:103422992
description splicing factor, suppressor of white-apricot homolog
nr
ID XP_008359280.1
description PREDICTED: splicing factor, suppressor of white-apricot homolog [Malus domestica]
swissprot
ID -
description -
trembl
ID M1B2E0
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400013649 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04910: 517995-518618
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_590 0.0 - - PREDICTED: splicing factor, suppressor of white-apricot homolog [Malus domestica]
2 Hb_000421_270 0.1351664223 transcription factor TF Family: LOB LOB domain-containing protein 1 [Theobroma cacao]
3 Hb_002025_350 0.1505616465 - - PREDICTED: glutamate decarboxylase 4 [Jatropha curcas]
4 Hb_002835_350 0.1700208848 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
5 Hb_001405_150 0.1703678519 - - PREDICTED: protein At-4/1 [Jatropha curcas]
6 Hb_032631_050 0.1765694515 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
7 Hb_003592_030 0.1807726397 - - PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]
8 Hb_011200_020 0.1831210762 - - aldo-keto reductase, putative [Ricinus communis]
9 Hb_021409_140 0.1902751611 - - PREDICTED: trehalase isoform X1 [Jatropha curcas]
10 Hb_001348_210 0.1964923776 - - defensin protein precursor [Capsicum annuum]
11 Hb_011633_040 0.2031861834 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
12 Hb_001414_020 0.2036417785 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
13 Hb_000753_250 0.2061620908 - - PREDICTED: uncharacterized protein LOC105640661 [Jatropha curcas]
14 Hb_006788_010 0.2110081754 - - PREDICTED: calcium-transporting ATPase 12, plasma membrane-type [Jatropha curcas]
15 Hb_172426_050 0.2115994493 - - PREDICTED: uncharacterized protein LOC105634266 [Jatropha curcas]
16 Hb_001776_190 0.2131694364 - - PREDICTED: protein kinase 2A, chloroplastic-like [Jatropha curcas]
17 Hb_032225_040 0.2144416612 - - -
18 Hb_000005_230 0.2152638669 - - hypothetical protein POPTR_0009s01160g [Populus trichocarpa]
19 Hb_001558_030 0.2153300345 - - phosphofructokinase [Hevea brasiliensis]
20 Hb_002539_010 0.2171944978 - - hypothetical protein JCGZ_15711 [Jatropha curcas]

Gene co-expression network

sample Hb_000116_590 Hb_000116_590 Hb_000421_270 Hb_000421_270 Hb_000116_590--Hb_000421_270 Hb_002025_350 Hb_002025_350 Hb_000116_590--Hb_002025_350 Hb_002835_350 Hb_002835_350 Hb_000116_590--Hb_002835_350 Hb_001405_150 Hb_001405_150 Hb_000116_590--Hb_001405_150 Hb_032631_050 Hb_032631_050 Hb_000116_590--Hb_032631_050 Hb_003592_030 Hb_003592_030 Hb_000116_590--Hb_003592_030 Hb_000421_270--Hb_002025_350 Hb_000421_270--Hb_032631_050 Hb_011200_020 Hb_011200_020 Hb_000421_270--Hb_011200_020 Hb_029584_090 Hb_029584_090 Hb_000421_270--Hb_029584_090 Hb_000963_200 Hb_000963_200 Hb_000421_270--Hb_000963_200 Hb_002025_350--Hb_032631_050 Hb_000227_370 Hb_000227_370 Hb_002025_350--Hb_000227_370 Hb_002025_350--Hb_029584_090 Hb_000005_230 Hb_000005_230 Hb_002025_350--Hb_000005_230 Hb_002025_350--Hb_001405_150 Hb_006141_030 Hb_006141_030 Hb_002835_350--Hb_006141_030 Hb_002835_350--Hb_032631_050 Hb_002539_010 Hb_002539_010 Hb_002835_350--Hb_002539_010 Hb_002835_350--Hb_011200_020 Hb_000098_310 Hb_000098_310 Hb_002835_350--Hb_000098_310 Hb_000034_030 Hb_000034_030 Hb_001405_150--Hb_000034_030 Hb_001006_280 Hb_001006_280 Hb_001405_150--Hb_001006_280 Hb_001024_030 Hb_001024_030 Hb_001405_150--Hb_001024_030 Hb_001018_080 Hb_001018_080 Hb_001405_150--Hb_001018_080 Hb_001405_150--Hb_000421_270 Hb_001348_210 Hb_001348_210 Hb_032631_050--Hb_001348_210 Hb_032631_050--Hb_011200_020 Hb_032631_050--Hb_000963_200 Hb_032631_050--Hb_029584_090 Hb_002835_340 Hb_002835_340 Hb_003592_030--Hb_002835_340 Hb_030982_060 Hb_030982_060 Hb_003592_030--Hb_030982_060 Hb_009736_010 Hb_009736_010 Hb_003592_030--Hb_009736_010 Hb_001439_110 Hb_001439_110 Hb_003592_030--Hb_001439_110 Hb_004724_450 Hb_004724_450 Hb_003592_030--Hb_004724_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0136356 2.26626 2.78405 3.28998 0.0519719 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.962926 2.71256 0.229606 12.5727 1.73857

CAGE analysis