Hb_002835_340

Information

Type -
Description -
Location Contig2835: 302528-313348
Sequence    

Annotation

kegg
ID rcu:RCOM_1509320
description copper amine oxidase, putative
nr
ID XP_012079991.1
description PREDICTED: peroxisomal primary amine oxidase [Jatropha curcas]
swissprot
ID Q07123
description Copper methylamine oxidase OS=Arthrobacter sp. (strain P1) GN=maoII PE=1 SV=1
trembl
ID A0A067KFJ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11416 PE=3 SV=1
Gene Ontology
ID GO:0005777
description copper amine oxidase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29654: 302702-302814 , PASA_asmbl_29655: 302914-313340 , PASA_asmbl_29656: 302914-313340
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002835_340 0.0 - - PREDICTED: peroxisomal primary amine oxidase [Jatropha curcas]
2 Hb_001975_040 0.1582746946 rubber biosynthesis Gene Name: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Hevea brasiliensis]
3 Hb_000317_420 0.1597588341 - - PREDICTED: extradiol ring-cleavage dioxygenase [Jatropha curcas]
4 Hb_003592_030 0.1668885184 - - PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]
5 Hb_002539_040 0.1813533782 - - SPFH domain-containing protein 2 precursor, putative [Ricinus communis]
6 Hb_012807_130 0.1876370764 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
7 Hb_002660_120 0.1885287235 - - PREDICTED: putative serine/threonine-protein kinase [Populus euphratica]
8 Hb_005408_070 0.1900436108 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP4 [Jatropha curcas]
9 Hb_002338_030 0.1919476173 - - PREDICTED: 60S acidic ribosomal protein P1-like [Tarenaya hassleriana]
10 Hb_006836_030 0.1929268902 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
11 Hb_006538_190 0.1972072088 - - PREDICTED: homocysteine S-methyltransferase 1 isoform X1 [Jatropha curcas]
12 Hb_000175_470 0.1977596523 - - lactoylglutathione lyase, putative [Ricinus communis]
13 Hb_027380_190 0.19863069 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
14 Hb_000567_180 0.2007477478 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.5 [Jatropha curcas]
15 Hb_002627_020 0.2040014506 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
16 Hb_001675_030 0.2086974917 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004724_450 0.2088283946 - - PREDICTED: uncharacterized protein LOC105647069 isoform X1 [Jatropha curcas]
18 Hb_001148_090 0.209653328 - - hypothetical protein JCGZ_14711 [Jatropha curcas]
19 Hb_000599_310 0.2110070632 - - PREDICTED: pleckstrin homology domain-containing family A member 8-like [Jatropha curcas]
20 Hb_000754_070 0.2162240714 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002835_340 Hb_002835_340 Hb_001975_040 Hb_001975_040 Hb_002835_340--Hb_001975_040 Hb_000317_420 Hb_000317_420 Hb_002835_340--Hb_000317_420 Hb_003592_030 Hb_003592_030 Hb_002835_340--Hb_003592_030 Hb_002539_040 Hb_002539_040 Hb_002835_340--Hb_002539_040 Hb_012807_130 Hb_012807_130 Hb_002835_340--Hb_012807_130 Hb_002660_120 Hb_002660_120 Hb_002835_340--Hb_002660_120 Hb_001975_040--Hb_000317_420 Hb_006836_030 Hb_006836_030 Hb_001975_040--Hb_006836_030 Hb_001975_030 Hb_001975_030 Hb_001975_040--Hb_001975_030 Hb_000012_110 Hb_000012_110 Hb_001975_040--Hb_000012_110 Hb_001975_040--Hb_002660_120 Hb_000317_420--Hb_006836_030 Hb_007441_240 Hb_007441_240 Hb_000317_420--Hb_007441_240 Hb_004007_110 Hb_004007_110 Hb_000317_420--Hb_004007_110 Hb_000723_170 Hb_000723_170 Hb_000317_420--Hb_000723_170 Hb_158104_020 Hb_158104_020 Hb_000317_420--Hb_158104_020 Hb_000116_590 Hb_000116_590 Hb_003592_030--Hb_000116_590 Hb_030982_060 Hb_030982_060 Hb_003592_030--Hb_030982_060 Hb_009736_010 Hb_009736_010 Hb_003592_030--Hb_009736_010 Hb_001439_110 Hb_001439_110 Hb_003592_030--Hb_001439_110 Hb_004724_450 Hb_004724_450 Hb_003592_030--Hb_004724_450 Hb_005408_070 Hb_005408_070 Hb_002539_040--Hb_005408_070 Hb_000175_470 Hb_000175_470 Hb_002539_040--Hb_000175_470 Hb_001148_090 Hb_001148_090 Hb_002539_040--Hb_001148_090 Hb_000567_180 Hb_000567_180 Hb_002539_040--Hb_000567_180 Hb_000889_010 Hb_000889_010 Hb_002539_040--Hb_000889_010 Hb_001148_100 Hb_001148_100 Hb_002539_040--Hb_001148_100 Hb_000007_200 Hb_000007_200 Hb_012807_130--Hb_000007_200 Hb_007590_090 Hb_007590_090 Hb_012807_130--Hb_007590_090 Hb_012807_130--Hb_004007_110 Hb_000648_050 Hb_000648_050 Hb_012807_130--Hb_000648_050 Hb_001998_200 Hb_001998_200 Hb_012807_130--Hb_001998_200 Hb_000645_200 Hb_000645_200 Hb_012807_130--Hb_000645_200 Hb_011872_020 Hb_011872_020 Hb_002660_120--Hb_011872_020 Hb_000092_120 Hb_000092_120 Hb_002660_120--Hb_000092_120 Hb_027654_080 Hb_027654_080 Hb_002660_120--Hb_027654_080 Hb_002660_120--Hb_001975_030 Hb_028707_070 Hb_028707_070 Hb_002660_120--Hb_028707_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.12287 3.27693 4.46479 10.2409 0.0470338 0.0162149
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.95062 8.93667 1.11986 10.579 3.86308

CAGE analysis