Hb_000092_120

Information

Type -
Description -
Location Contig92: 122875-125766
Sequence    

Annotation

kegg
ID pop:POPTR_0016s04710g
description POPTRDRAFT_255616; hypothetical protein
nr
ID XP_011033225.1
description PREDICTED: non-structural maintenance of chromosomes element 4 homolog A-like [Populus euphratica]
swissprot
ID Q9C689
description Non-structural maintenance of chromosomes element 4 homolog A OS=Arabidopsis thaliana GN=NSE4A PE=2 SV=1
trembl
ID A0A067JKW2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25532 PE=4 SV=1
Gene Ontology
ID GO:0005634
description non-structural maintenance of chromosomes element 4 homolog a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62372: 122887-123904 , PASA_asmbl_62373: 123474-123799 , PASA_asmbl_62374: 124168-124604
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000092_120 0.0 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A-like [Populus euphratica]
2 Hb_027654_080 0.1602529518 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like isoform X1 [Jatropha curcas]
3 Hb_003040_040 0.1652155482 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1-like isoform X2 [Jatropha curcas]
4 Hb_002660_120 0.1653265966 - - PREDICTED: putative serine/threonine-protein kinase [Populus euphratica]
5 Hb_010891_020 0.1685834705 - - Cucumisin precursor, putative [Ricinus communis]
6 Hb_000057_130 0.1687439407 - - PREDICTED: pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Jatropha curcas]
7 Hb_002016_140 0.1691518695 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Jatropha curcas]
8 Hb_000203_210 0.1702436968 - - PREDICTED: uncharacterized protein LOC105040619 isoform X3 [Elaeis guineensis]
9 Hb_001975_030 0.1719844424 - - 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase, partial [Plectranthus barbatus]
10 Hb_001300_170 0.1765955098 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006816_480 0.1768994873 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
12 Hb_000005_340 0.179728993 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
13 Hb_001376_060 0.1803262316 - - PREDICTED: probable serine/threonine-protein kinase abkC isoform X2 [Jatropha curcas]
14 Hb_152868_030 0.1815092149 - - abhydrolase domain containing, putative [Ricinus communis]
15 Hb_000386_050 0.1816071608 - - PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Jatropha curcas]
16 Hb_001616_110 0.1818643231 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
17 Hb_003417_030 0.1845481399 - - PREDICTED: sister chromatid cohesion 1 protein 2 isoform X1 [Jatropha curcas]
18 Hb_000320_020 0.1845796498 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
19 Hb_001277_050 0.1883850767 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
20 Hb_003910_050 0.1888862621 - - PREDICTED: uncharacterized protein LOC105646926 [Jatropha curcas]

Gene co-expression network

sample Hb_000092_120 Hb_000092_120 Hb_027654_080 Hb_027654_080 Hb_000092_120--Hb_027654_080 Hb_003040_040 Hb_003040_040 Hb_000092_120--Hb_003040_040 Hb_002660_120 Hb_002660_120 Hb_000092_120--Hb_002660_120 Hb_010891_020 Hb_010891_020 Hb_000092_120--Hb_010891_020 Hb_000057_130 Hb_000057_130 Hb_000092_120--Hb_000057_130 Hb_002016_140 Hb_002016_140 Hb_000092_120--Hb_002016_140 Hb_027654_080--Hb_010891_020 Hb_012340_060 Hb_012340_060 Hb_027654_080--Hb_012340_060 Hb_000529_280 Hb_000529_280 Hb_027654_080--Hb_000529_280 Hb_001616_110 Hb_001616_110 Hb_027654_080--Hb_001616_110 Hb_001277_050 Hb_001277_050 Hb_027654_080--Hb_001277_050 Hb_000645_200 Hb_000645_200 Hb_027654_080--Hb_000645_200 Hb_001277_030 Hb_001277_030 Hb_003040_040--Hb_001277_030 Hb_001571_060 Hb_001571_060 Hb_003040_040--Hb_001571_060 Hb_002486_080 Hb_002486_080 Hb_003040_040--Hb_002486_080 Hb_003040_040--Hb_001277_050 Hb_005656_170 Hb_005656_170 Hb_003040_040--Hb_005656_170 Hb_005946_150 Hb_005946_150 Hb_003040_040--Hb_005946_150 Hb_011872_020 Hb_011872_020 Hb_002660_120--Hb_011872_020 Hb_001975_040 Hb_001975_040 Hb_002660_120--Hb_001975_040 Hb_002660_120--Hb_027654_080 Hb_001975_030 Hb_001975_030 Hb_002660_120--Hb_001975_030 Hb_028707_070 Hb_028707_070 Hb_002660_120--Hb_028707_070 Hb_002766_050 Hb_002766_050 Hb_010891_020--Hb_002766_050 Hb_006120_150 Hb_006120_150 Hb_010891_020--Hb_006120_150 Hb_010891_020--Hb_012340_060 Hb_025787_010 Hb_025787_010 Hb_010891_020--Hb_025787_010 Hb_004208_140 Hb_004208_140 Hb_010891_020--Hb_004208_140 Hb_000861_100 Hb_000861_100 Hb_000057_130--Hb_000861_100 Hb_003371_070 Hb_003371_070 Hb_000057_130--Hb_003371_070 Hb_001754_050 Hb_001754_050 Hb_000057_130--Hb_001754_050 Hb_004129_010 Hb_004129_010 Hb_000057_130--Hb_004129_010 Hb_000339_020 Hb_000339_020 Hb_000057_130--Hb_000339_020 Hb_000922_320 Hb_000922_320 Hb_000057_130--Hb_000922_320 Hb_002391_320 Hb_002391_320 Hb_002016_140--Hb_002391_320 Hb_001329_070 Hb_001329_070 Hb_002016_140--Hb_001329_070 Hb_000589_170 Hb_000589_170 Hb_002016_140--Hb_000589_170 Hb_012851_020 Hb_012851_020 Hb_002016_140--Hb_012851_020 Hb_000753_110 Hb_000753_110 Hb_002016_140--Hb_000753_110 Hb_000206_230 Hb_000206_230 Hb_002016_140--Hb_000206_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.171456 5.15794 4.7056 3.47537 0.0671372 0.0620638
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.75556 3.25556 0.880298 4.29245 5.15898

CAGE analysis