Hb_002660_120

Information

Type -
Description -
Location Contig2660: 106794-108782
Sequence    

Annotation

kegg
ID pop:POPTR_0006s13040g
description hypothetical protein
nr
ID XP_011048554.1
description PREDICTED: putative serine/threonine-protein kinase [Populus euphratica]
swissprot
ID P85193
description Putative serine/threonine-protein kinase (Fragment) OS=Helianthus annuus PE=1 SV=1
trembl
ID A0A067K220
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16497 PE=3 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27792: 106842-107566
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002660_120 0.0 - - PREDICTED: putative serine/threonine-protein kinase [Populus euphratica]
2 Hb_011872_020 0.1426003866 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH128 [Jatropha curcas]
3 Hb_001975_040 0.1645794115 rubber biosynthesis Gene Name: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Hevea brasiliensis]
4 Hb_000092_120 0.1653265966 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A-like [Populus euphratica]
5 Hb_027654_080 0.1732585265 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like isoform X1 [Jatropha curcas]
6 Hb_001975_030 0.1751275919 - - 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase, partial [Plectranthus barbatus]
7 Hb_028707_070 0.1842114524 - - short-chain dehydrogenase, putative [Ricinus communis]
8 Hb_008948_120 0.1874404537 - - PREDICTED: heme oxygenase 1, chloroplastic-like [Jatropha curcas]
9 Hb_152868_030 0.1883549076 - - abhydrolase domain containing, putative [Ricinus communis]
10 Hb_002835_340 0.1885287235 - - PREDICTED: peroxisomal primary amine oxidase [Jatropha curcas]
11 Hb_000529_280 0.1886936886 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
12 Hb_000979_110 0.1919231124 - - PREDICTED: GPI mannosyltransferase 2 [Jatropha curcas]
13 Hb_027380_190 0.1947342103 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
14 Hb_003040_040 0.1951143787 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1-like isoform X2 [Jatropha curcas]
15 Hb_007590_090 0.1963017106 - - PREDICTED: O-glucosyltransferase rumi [Jatropha curcas]
16 Hb_000983_080 0.196638833 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
17 Hb_001277_050 0.1968133371 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
18 Hb_012340_060 0.1991417286 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000012_110 0.2001207894 - - hypothetical protein CICLE_v10008613mg [Citrus clementina]
20 Hb_005015_110 0.2003166077 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002660_120 Hb_002660_120 Hb_011872_020 Hb_011872_020 Hb_002660_120--Hb_011872_020 Hb_001975_040 Hb_001975_040 Hb_002660_120--Hb_001975_040 Hb_000092_120 Hb_000092_120 Hb_002660_120--Hb_000092_120 Hb_027654_080 Hb_027654_080 Hb_002660_120--Hb_027654_080 Hb_001975_030 Hb_001975_030 Hb_002660_120--Hb_001975_030 Hb_028707_070 Hb_028707_070 Hb_002660_120--Hb_028707_070 Hb_005016_010 Hb_005016_010 Hb_011872_020--Hb_005016_010 Hb_177215_030 Hb_177215_030 Hb_011872_020--Hb_177215_030 Hb_002170_020 Hb_002170_020 Hb_011872_020--Hb_002170_020 Hb_000258_050 Hb_000258_050 Hb_011872_020--Hb_000258_050 Hb_006816_480 Hb_006816_480 Hb_011872_020--Hb_006816_480 Hb_000317_420 Hb_000317_420 Hb_001975_040--Hb_000317_420 Hb_006836_030 Hb_006836_030 Hb_001975_040--Hb_006836_030 Hb_001975_040--Hb_001975_030 Hb_002835_340 Hb_002835_340 Hb_001975_040--Hb_002835_340 Hb_000012_110 Hb_000012_110 Hb_001975_040--Hb_000012_110 Hb_000092_120--Hb_027654_080 Hb_003040_040 Hb_003040_040 Hb_000092_120--Hb_003040_040 Hb_010891_020 Hb_010891_020 Hb_000092_120--Hb_010891_020 Hb_000057_130 Hb_000057_130 Hb_000092_120--Hb_000057_130 Hb_002016_140 Hb_002016_140 Hb_000092_120--Hb_002016_140 Hb_027654_080--Hb_010891_020 Hb_012340_060 Hb_012340_060 Hb_027654_080--Hb_012340_060 Hb_000529_280 Hb_000529_280 Hb_027654_080--Hb_000529_280 Hb_001616_110 Hb_001616_110 Hb_027654_080--Hb_001616_110 Hb_001277_050 Hb_001277_050 Hb_027654_080--Hb_001277_050 Hb_000645_200 Hb_000645_200 Hb_027654_080--Hb_000645_200 Hb_001817_100 Hb_001817_100 Hb_001975_030--Hb_001817_100 Hb_007590_090 Hb_007590_090 Hb_001975_030--Hb_007590_090 Hb_001975_030--Hb_000012_110 Hb_002615_030 Hb_002615_030 Hb_001975_030--Hb_002615_030 Hb_001998_200 Hb_001998_200 Hb_001975_030--Hb_001998_200 Hb_000110_060 Hb_000110_060 Hb_001975_030--Hb_000110_060 Hb_000979_110 Hb_000979_110 Hb_028707_070--Hb_000979_110 Hb_001153_180 Hb_001153_180 Hb_028707_070--Hb_001153_180 Hb_028707_070--Hb_006816_480 Hb_004453_080 Hb_004453_080 Hb_028707_070--Hb_004453_080 Hb_012725_120 Hb_012725_120 Hb_028707_070--Hb_012725_120 Hb_000699_230 Hb_000699_230 Hb_028707_070--Hb_000699_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.290868 1.4209 1.16792 1.45626 0 0.0299324
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.502368 2.00422 0.527737 2.06566 1.35096

CAGE analysis