Hb_012725_120

Information

Type -
Description -
Location Contig12725: 115620-116771
Sequence    

Annotation

kegg
ID rcu:RCOM_0666450
description hypothetical protein
nr
ID XP_012075221.1
description PREDICTED: stress enhanced protein 2, chloroplastic [Jatropha curcas]
swissprot
ID Q9SJ02
description Stress enhanced protein 2, chloroplastic OS=Arabidopsis thaliana GN=SEP2 PE=2 SV=1
trembl
ID A0A067KTV2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09398 PE=4 SV=1
Gene Ontology
ID GO:0016168
description stress enhanced protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08335: 113852-114631 , PASA_asmbl_08336: 113852-114621 , PASA_asmbl_08337: 115637-116915
cDNA
(Sanger)
(ID:Location)		 002_M13.ab1: 114040-114621 , 013_O17.ab1: 114040-114621 , 018_M24.ab1: 114028-114623 , 031_O21.ab1: 114040-114621 , 038_K05.ab1: 114040-114631

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012725_120 0.0 - - PREDICTED: stress enhanced protein 2, chloroplastic [Jatropha curcas]
2 Hb_001376_060 0.1086830433 - - PREDICTED: probable serine/threonine-protein kinase abkC isoform X2 [Jatropha curcas]
3 Hb_001728_020 0.1469227196 - - PREDICTED: trans-1,2-dihydrobenzene-1,2-diol dehydrogenase [Jatropha curcas]
4 Hb_000529_280 0.1480358224 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
5 Hb_000506_110 0.1506909891 - - PREDICTED: probable serine/threonine-protein kinase WNK11 [Jatropha curcas]
6 Hb_027654_080 0.1564024016 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like isoform X1 [Jatropha curcas]
7 Hb_003462_160 0.1587959981 transcription factor TF Family: GNAT predicted protein [Arabidopsis lyrata subsp. lyrata]
8 Hb_003462_180 0.1617056935 transcription factor TF Family: GNAT PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]
9 Hb_000164_100 0.1618238387 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]
10 Hb_002701_220 0.162860003 - - PREDICTED: solute carrier family 25 member 44 [Jatropha curcas]
11 Hb_005656_170 0.1628781266 - - PREDICTED: uncharacterized protein LOC105637447 isoform X1 [Jatropha curcas]
12 Hb_000256_090 0.1638670493 - - PREDICTED: uncharacterized protein LOC105637579 [Jatropha curcas]
13 Hb_028707_070 0.1661251757 - - short-chain dehydrogenase, putative [Ricinus communis]
14 Hb_003040_040 0.1668774475 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1-like isoform X2 [Jatropha curcas]
15 Hb_000000_230 0.1713863173 transcription factor TF Family: LIM PREDICTED: protein DA1 isoform X1 [Jatropha curcas]
16 Hb_093458_010 0.1732841089 - - hypothetical protein CISIN_1g0277592mg [Citrus sinensis]
17 Hb_001648_030 0.1740765079 - - PREDICTED: uncharacterized protein LOC105628931 isoform X2 [Jatropha curcas]
18 Hb_004774_020 0.1747337427 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]
19 Hb_076778_010 0.1755762559 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
20 Hb_001439_230 0.1778994387 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_012725_120 Hb_012725_120 Hb_001376_060 Hb_001376_060 Hb_012725_120--Hb_001376_060 Hb_001728_020 Hb_001728_020 Hb_012725_120--Hb_001728_020 Hb_000529_280 Hb_000529_280 Hb_012725_120--Hb_000529_280 Hb_000506_110 Hb_000506_110 Hb_012725_120--Hb_000506_110 Hb_027654_080 Hb_027654_080 Hb_012725_120--Hb_027654_080 Hb_003462_160 Hb_003462_160 Hb_012725_120--Hb_003462_160 Hb_003040_040 Hb_003040_040 Hb_001376_060--Hb_003040_040 Hb_005656_170 Hb_005656_170 Hb_001376_060--Hb_005656_170 Hb_015807_160 Hb_015807_160 Hb_001376_060--Hb_015807_160 Hb_001376_060--Hb_003462_160 Hb_003462_180 Hb_003462_180 Hb_001376_060--Hb_003462_180 Hb_001728_020--Hb_000529_280 Hb_006060_020 Hb_006060_020 Hb_001728_020--Hb_006060_020 Hb_026198_010 Hb_026198_010 Hb_001728_020--Hb_026198_010 Hb_172632_050 Hb_172632_050 Hb_001728_020--Hb_172632_050 Hb_000732_190 Hb_000732_190 Hb_001728_020--Hb_000732_190 Hb_002686_150 Hb_002686_150 Hb_001728_020--Hb_002686_150 Hb_000723_230 Hb_000723_230 Hb_000529_280--Hb_000723_230 Hb_000645_200 Hb_000645_200 Hb_000529_280--Hb_000645_200 Hb_000139_470 Hb_000139_470 Hb_000529_280--Hb_000139_470 Hb_000529_280--Hb_172632_050 Hb_093458_010 Hb_093458_010 Hb_000529_280--Hb_093458_010 Hb_000506_110--Hb_003462_180 Hb_002259_170 Hb_002259_170 Hb_000506_110--Hb_002259_170 Hb_001511_090 Hb_001511_090 Hb_000506_110--Hb_001511_090 Hb_000160_140 Hb_000160_140 Hb_000506_110--Hb_000160_140 Hb_008120_040 Hb_008120_040 Hb_000506_110--Hb_008120_040 Hb_001269_370 Hb_001269_370 Hb_000506_110--Hb_001269_370 Hb_010891_020 Hb_010891_020 Hb_027654_080--Hb_010891_020 Hb_012340_060 Hb_012340_060 Hb_027654_080--Hb_012340_060 Hb_027654_080--Hb_000529_280 Hb_001616_110 Hb_001616_110 Hb_027654_080--Hb_001616_110 Hb_001277_050 Hb_001277_050 Hb_027654_080--Hb_001277_050 Hb_027654_080--Hb_000645_200 Hb_001558_080 Hb_001558_080 Hb_003462_160--Hb_001558_080 Hb_001252_220 Hb_001252_220 Hb_003462_160--Hb_001252_220 Hb_002060_010 Hb_002060_010 Hb_003462_160--Hb_002060_010 Hb_002260_010 Hb_002260_010 Hb_003462_160--Hb_002260_010 Hb_000155_160 Hb_000155_160 Hb_003462_160--Hb_000155_160 Hb_006256_030 Hb_006256_030 Hb_003462_160--Hb_006256_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.1431 93.1457 73.4656 56.1624 3.79982 9.16676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.2701 101.041 24.1761 34.4851 69.5598

CAGE analysis