Hb_001376_060

Information

Type -
Description -
Location Contig1376: 77804-87241
Sequence    

Annotation

kegg
ID tcc:TCM_031293
description AarF domain-containing kinase isoform 1
nr
ID XP_012070678.1
description PREDICTED: probable serine/threonine-protein kinase abkC isoform X2 [Jatropha curcas]
swissprot
ID Q55G83
description Probable serine/threonine-protein kinase abkC OS=Dictyostelium discoideum GN=abkC PE=3 SV=1
trembl
ID A0A067KVE1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00720 PE=4 SV=1
Gene Ontology
ID GO:0016301
description probable serine threonine-protein kinase abkc isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10350: 79234-79980 , PASA_asmbl_10351: 83084-83416
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001376_060 0.0 - - PREDICTED: probable serine/threonine-protein kinase abkC isoform X2 [Jatropha curcas]
2 Hb_012725_120 0.1086830433 - - PREDICTED: stress enhanced protein 2, chloroplastic [Jatropha curcas]
3 Hb_003040_040 0.1426124411 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1-like isoform X2 [Jatropha curcas]
4 Hb_005656_170 0.1430748829 - - PREDICTED: uncharacterized protein LOC105637447 isoform X1 [Jatropha curcas]
5 Hb_015807_160 0.1474559154 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]
6 Hb_003462_160 0.1557541228 transcription factor TF Family: GNAT predicted protein [Arabidopsis lyrata subsp. lyrata]
7 Hb_003462_180 0.1599313942 transcription factor TF Family: GNAT PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]
8 Hb_000529_280 0.1612574678 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
9 Hb_027654_080 0.1665532182 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like isoform X1 [Jatropha curcas]
10 Hb_000506_110 0.167766586 - - PREDICTED: probable serine/threonine-protein kinase WNK11 [Jatropha curcas]
11 Hb_093458_010 0.1711876408 - - hypothetical protein CISIN_1g0277592mg [Citrus sinensis]
12 Hb_001322_230 0.1767060753 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
13 Hb_000092_120 0.1803262316 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A-like [Populus euphratica]
14 Hb_001767_060 0.1803335719 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
15 Hb_001728_020 0.1818478775 - - PREDICTED: trans-1,2-dihydrobenzene-1,2-diol dehydrogenase [Jatropha curcas]
16 Hb_001863_070 0.1866303406 - - Queuine tRNA-ribosyltransferase [Theobroma cacao]
17 Hb_000189_130 0.1868732852 - - PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Jatropha curcas]
18 Hb_003181_060 0.1869501264 - - PREDICTED: triosephosphate isomerase, cytosolic [Jatropha curcas]
19 Hb_153269_010 0.1873679307 - - hypothetical protein CICLE_v10029937mg [Citrus clementina]
20 Hb_001277_050 0.1875489437 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001376_060 Hb_001376_060 Hb_012725_120 Hb_012725_120 Hb_001376_060--Hb_012725_120 Hb_003040_040 Hb_003040_040 Hb_001376_060--Hb_003040_040 Hb_005656_170 Hb_005656_170 Hb_001376_060--Hb_005656_170 Hb_015807_160 Hb_015807_160 Hb_001376_060--Hb_015807_160 Hb_003462_160 Hb_003462_160 Hb_001376_060--Hb_003462_160 Hb_003462_180 Hb_003462_180 Hb_001376_060--Hb_003462_180 Hb_001728_020 Hb_001728_020 Hb_012725_120--Hb_001728_020 Hb_000529_280 Hb_000529_280 Hb_012725_120--Hb_000529_280 Hb_000506_110 Hb_000506_110 Hb_012725_120--Hb_000506_110 Hb_027654_080 Hb_027654_080 Hb_012725_120--Hb_027654_080 Hb_012725_120--Hb_003462_160 Hb_001277_030 Hb_001277_030 Hb_003040_040--Hb_001277_030 Hb_001571_060 Hb_001571_060 Hb_003040_040--Hb_001571_060 Hb_002486_080 Hb_002486_080 Hb_003040_040--Hb_002486_080 Hb_001277_050 Hb_001277_050 Hb_003040_040--Hb_001277_050 Hb_003040_040--Hb_005656_170 Hb_005946_150 Hb_005946_150 Hb_003040_040--Hb_005946_150 Hb_005656_170--Hb_003462_180 Hb_005656_170--Hb_000506_110 Hb_000023_360 Hb_000023_360 Hb_005656_170--Hb_000023_360 Hb_027506_040 Hb_027506_040 Hb_005656_170--Hb_027506_040 Hb_001511_090 Hb_001511_090 Hb_005656_170--Hb_001511_090 Hb_005656_170--Hb_001277_050 Hb_093458_010 Hb_093458_010 Hb_015807_160--Hb_093458_010 Hb_001863_070 Hb_001863_070 Hb_015807_160--Hb_001863_070 Hb_001767_060 Hb_001767_060 Hb_015807_160--Hb_001767_060 Hb_040819_010 Hb_040819_010 Hb_015807_160--Hb_040819_010 Hb_002028_090 Hb_002028_090 Hb_015807_160--Hb_002028_090 Hb_001114_170 Hb_001114_170 Hb_015807_160--Hb_001114_170 Hb_001558_080 Hb_001558_080 Hb_003462_160--Hb_001558_080 Hb_001252_220 Hb_001252_220 Hb_003462_160--Hb_001252_220 Hb_002060_010 Hb_002060_010 Hb_003462_160--Hb_002060_010 Hb_002260_010 Hb_002260_010 Hb_003462_160--Hb_002260_010 Hb_000155_160 Hb_000155_160 Hb_003462_160--Hb_000155_160 Hb_006256_030 Hb_006256_030 Hb_003462_160--Hb_006256_030 Hb_003462_180--Hb_000506_110 Hb_003462_180--Hb_000023_360 Hb_001629_090 Hb_001629_090 Hb_003462_180--Hb_001629_090 Hb_003462_180--Hb_001511_090 Hb_049575_010 Hb_049575_010 Hb_003462_180--Hb_049575_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.92855 5.18166 8.32335 3.97009 0.286374 0.30627
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.54597 7.50733 1.23172 2.84247 5.45973

CAGE analysis