Hb_003040_040

Information

Type -
Description -
Location Contig3040: 89119-93216
Sequence    

Annotation

kegg
ID rcu:RCOM_0801350
description hypothetical protein
nr
ID XP_012077387.1
description PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1-like isoform X2 [Jatropha curcas]
swissprot
ID Q9XI47
description Protein SAWADEE HOMEODOMAIN HOMOLOG 1 OS=Arabidopsis thaliana GN=SHH1 PE=1 SV=1
trembl
ID A0A067KQT5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07740 PE=4 SV=1
Gene Ontology
ID GO:0003677
description protein sawadee homeodomain homolog 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32080: 89450-90016 , PASA_asmbl_32081: 88946-90956 , PASA_asmbl_32083: 91855-93159
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003040_040 0.0 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1-like isoform X2 [Jatropha curcas]
2 Hb_001277_030 0.1189565226 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Nelumbo nucifera]
3 Hb_001571_060 0.1222979164 - - PREDICTED: uncharacterized protein LOC105643976 [Jatropha curcas]
4 Hb_002486_080 0.12890715 - - PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X1 [Jatropha curcas]
5 Hb_001277_050 0.1308991876 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
6 Hb_005656_170 0.1349265035 - - PREDICTED: uncharacterized protein LOC105637447 isoform X1 [Jatropha curcas]
7 Hb_005946_150 0.1382831246 - - PREDICTED: DNA mismatch repair protein MSH7 [Jatropha curcas]
8 Hb_005015_110 0.1386520974 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Jatropha curcas]
9 Hb_000979_110 0.1392436906 - - PREDICTED: GPI mannosyltransferase 2 [Jatropha curcas]
10 Hb_003910_050 0.1400824196 - - PREDICTED: uncharacterized protein LOC105646926 [Jatropha curcas]
11 Hb_002900_110 0.1424124217 - - amino acid transporter, putative [Ricinus communis]
12 Hb_001376_060 0.1426124411 - - PREDICTED: probable serine/threonine-protein kinase abkC isoform X2 [Jatropha curcas]
13 Hb_005883_080 0.1457291262 - - type 2A protein phosphatase-2 [Populus trichocarpa]
14 Hb_001511_090 0.1467974176 - - PREDICTED: uncharacterized protein LOC105645861 [Jatropha curcas]
15 Hb_006637_030 0.1477623213 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
16 Hb_002126_030 0.1489713817 - - ferrochelatase, putative [Ricinus communis]
17 Hb_003462_180 0.1491467195 transcription factor TF Family: GNAT PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]
18 Hb_002534_130 0.1494765257 - - membrane associated ring finger 1,8, putative [Ricinus communis]
19 Hb_000189_130 0.1496073559 - - PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Jatropha curcas]
20 Hb_000330_090 0.1497298231 - - ornithine carbamoyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003040_040 Hb_003040_040 Hb_001277_030 Hb_001277_030 Hb_003040_040--Hb_001277_030 Hb_001571_060 Hb_001571_060 Hb_003040_040--Hb_001571_060 Hb_002486_080 Hb_002486_080 Hb_003040_040--Hb_002486_080 Hb_001277_050 Hb_001277_050 Hb_003040_040--Hb_001277_050 Hb_005656_170 Hb_005656_170 Hb_003040_040--Hb_005656_170 Hb_005946_150 Hb_005946_150 Hb_003040_040--Hb_005946_150 Hb_002900_110 Hb_002900_110 Hb_001277_030--Hb_002900_110 Hb_001277_030--Hb_005946_150 Hb_028960_030 Hb_028960_030 Hb_001277_030--Hb_028960_030 Hb_001277_030--Hb_001571_060 Hb_012733_040 Hb_012733_040 Hb_001277_030--Hb_012733_040 Hb_000364_050 Hb_000364_050 Hb_001277_030--Hb_000364_050 Hb_005015_110 Hb_005015_110 Hb_001571_060--Hb_005015_110 Hb_180378_010 Hb_180378_010 Hb_001571_060--Hb_180378_010 Hb_004218_180 Hb_004218_180 Hb_001571_060--Hb_004218_180 Hb_000666_010 Hb_000666_010 Hb_001571_060--Hb_000666_010 Hb_001571_060--Hb_002486_080 Hb_000535_050 Hb_000535_050 Hb_001571_060--Hb_000535_050 Hb_001301_280 Hb_001301_280 Hb_002486_080--Hb_001301_280 Hb_001951_060 Hb_001951_060 Hb_002486_080--Hb_001951_060 Hb_007416_070 Hb_007416_070 Hb_002486_080--Hb_007416_070 Hb_000465_150 Hb_000465_150 Hb_002486_080--Hb_000465_150 Hb_002281_020 Hb_002281_020 Hb_002486_080--Hb_002281_020 Hb_001269_620 Hb_001269_620 Hb_001277_050--Hb_001269_620 Hb_005686_130 Hb_005686_130 Hb_001277_050--Hb_005686_130 Hb_001147_050 Hb_001147_050 Hb_001277_050--Hb_001147_050 Hb_000088_260 Hb_000088_260 Hb_001277_050--Hb_000088_260 Hb_000638_130 Hb_000638_130 Hb_001277_050--Hb_000638_130 Hb_002534_130 Hb_002534_130 Hb_001277_050--Hb_002534_130 Hb_003462_180 Hb_003462_180 Hb_005656_170--Hb_003462_180 Hb_000506_110 Hb_000506_110 Hb_005656_170--Hb_000506_110 Hb_000023_360 Hb_000023_360 Hb_005656_170--Hb_000023_360 Hb_027506_040 Hb_027506_040 Hb_005656_170--Hb_027506_040 Hb_001511_090 Hb_001511_090 Hb_005656_170--Hb_001511_090 Hb_005656_170--Hb_001277_050 Hb_001269_130 Hb_001269_130 Hb_005946_150--Hb_001269_130 Hb_008304_020 Hb_008304_020 Hb_005946_150--Hb_008304_020 Hb_006824_010 Hb_006824_010 Hb_005946_150--Hb_006824_010 Hb_002006_150 Hb_002006_150 Hb_005946_150--Hb_002006_150 Hb_000330_090 Hb_000330_090 Hb_005946_150--Hb_000330_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.608192 3.29802 5.34729 3.28048 0.480815 0.925961
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.53349 4.06802 0.884013 4.26181 4.49616

CAGE analysis