Hb_027654_080

Information

Type -
Description -
Location Contig27654: 66073-69008
Sequence    

Annotation

kegg
ID sly:101252994
description CTD nuclear envelope phosphatase 1 homolog
nr
ID XP_012087846.1
description PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q54GB2
description CTD small phosphatase-like protein 2 OS=Dictyostelium discoideum GN=ctdspl2 PE=3 SV=1
trembl
ID A0A067JWQ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25009 PE=4 SV=1
Gene Ontology
ID GO:0016791
description carboxy-terminal domain rna polymerase ii polypeptide a small phosphatase 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28924: 66100-69127
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027654_080 0.0 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like isoform X1 [Jatropha curcas]
2 Hb_010891_020 0.1293439602 - - Cucumisin precursor, putative [Ricinus communis]
3 Hb_012340_060 0.1325765225 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000529_280 0.1358160721 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
5 Hb_001616_110 0.1360574892 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
6 Hb_001277_050 0.1368590768 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
7 Hb_000645_200 0.1404575346 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
8 Hb_001975_030 0.1458162119 - - 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase, partial [Plectranthus barbatus]
9 Hb_002343_010 0.1486040805 - - amino acid binding protein, putative [Ricinus communis]
10 Hb_001147_050 0.1500093472 - - PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic [Jatropha curcas]
11 Hb_093458_010 0.1540278255 - - hypothetical protein CISIN_1g0277592mg [Citrus sinensis]
12 Hb_012725_120 0.1564024016 - - PREDICTED: stress enhanced protein 2, chloroplastic [Jatropha curcas]
13 Hb_001269_620 0.1579956386 - - PREDICTED: magnesium transporter MRS2-1 isoform X1 [Populus euphratica]
14 Hb_002232_430 0.1588327187 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
15 Hb_000092_120 0.1602529518 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A-like [Populus euphratica]
16 Hb_001728_020 0.1606988559 - - PREDICTED: trans-1,2-dihydrobenzene-1,2-diol dehydrogenase [Jatropha curcas]
17 Hb_002534_130 0.1629814225 - - membrane associated ring finger 1,8, putative [Ricinus communis]
18 Hb_006970_050 0.1655237592 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
19 Hb_000732_190 0.1661874624 - - structural molecule, putative [Ricinus communis]
20 Hb_001376_060 0.1665532182 - - PREDICTED: probable serine/threonine-protein kinase abkC isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_027654_080 Hb_027654_080 Hb_010891_020 Hb_010891_020 Hb_027654_080--Hb_010891_020 Hb_012340_060 Hb_012340_060 Hb_027654_080--Hb_012340_060 Hb_000529_280 Hb_000529_280 Hb_027654_080--Hb_000529_280 Hb_001616_110 Hb_001616_110 Hb_027654_080--Hb_001616_110 Hb_001277_050 Hb_001277_050 Hb_027654_080--Hb_001277_050 Hb_000645_200 Hb_000645_200 Hb_027654_080--Hb_000645_200 Hb_002766_050 Hb_002766_050 Hb_010891_020--Hb_002766_050 Hb_006120_150 Hb_006120_150 Hb_010891_020--Hb_006120_150 Hb_010891_020--Hb_012340_060 Hb_025787_010 Hb_025787_010 Hb_010891_020--Hb_025787_010 Hb_004208_140 Hb_004208_140 Hb_010891_020--Hb_004208_140 Hb_001105_110 Hb_001105_110 Hb_012340_060--Hb_001105_110 Hb_168319_010 Hb_168319_010 Hb_012340_060--Hb_168319_010 Hb_002232_430 Hb_002232_430 Hb_012340_060--Hb_002232_430 Hb_004429_020 Hb_004429_020 Hb_012340_060--Hb_004429_020 Hb_001341_100 Hb_001341_100 Hb_012340_060--Hb_001341_100 Hb_001728_020 Hb_001728_020 Hb_000529_280--Hb_001728_020 Hb_000723_230 Hb_000723_230 Hb_000529_280--Hb_000723_230 Hb_000529_280--Hb_000645_200 Hb_000139_470 Hb_000139_470 Hb_000529_280--Hb_000139_470 Hb_172632_050 Hb_172632_050 Hb_000529_280--Hb_172632_050 Hb_093458_010 Hb_093458_010 Hb_000529_280--Hb_093458_010 Hb_002343_010 Hb_002343_010 Hb_001616_110--Hb_002343_010 Hb_001616_110--Hb_002766_050 Hb_000340_290 Hb_000340_290 Hb_001616_110--Hb_000340_290 Hb_000920_130 Hb_000920_130 Hb_001616_110--Hb_000920_130 Hb_001959_120 Hb_001959_120 Hb_001616_110--Hb_001959_120 Hb_001269_620 Hb_001269_620 Hb_001277_050--Hb_001269_620 Hb_005686_130 Hb_005686_130 Hb_001277_050--Hb_005686_130 Hb_001147_050 Hb_001147_050 Hb_001277_050--Hb_001147_050 Hb_000088_260 Hb_000088_260 Hb_001277_050--Hb_000088_260 Hb_000638_130 Hb_000638_130 Hb_001277_050--Hb_000638_130 Hb_002534_130 Hb_002534_130 Hb_001277_050--Hb_002534_130 Hb_000012_240 Hb_000012_240 Hb_000645_200--Hb_000012_240 Hb_000645_200--Hb_093458_010 Hb_000645_200--Hb_001728_020 Hb_002450_030 Hb_002450_030 Hb_000645_200--Hb_002450_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.584484 11.4876 10.99 8.7848 0.623534 0.93188
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.1236 10.5684 5.80929 7.2734 7.85105

CAGE analysis