Hb_002343_010

Information

Type -
Description -
Location Contig2343: 32379-35638
Sequence    

Annotation

kegg
ID rcu:RCOM_1681230
description amino acid binding protein, putative
nr
ID XP_002509632.1
description amino acid binding protein, putative [Ricinus communis]
swissprot
ID Q9LNA5
description ACT domain-containing protein ACR8 OS=Arabidopsis thaliana GN=ACR8 PE=2 SV=1
trembl
ID B9RBU8
description Amino acid binding protein, putative OS=Ricinus communis GN=RCOM_1681230 PE=4 SV=1
Gene Ontology
ID GO:0016597
description act domain-containing protein acr8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24575: 32443-35892
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002343_010 0.0 - - amino acid binding protein, putative [Ricinus communis]
2 Hb_001054_070 0.1199316569 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Pyrus x bretschneideri]
3 Hb_002774_200 0.1421063916 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
4 Hb_012762_040 0.1456581561 - - big map kinase/bmk, putative [Ricinus communis]
5 Hb_001616_110 0.1458360586 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
6 Hb_001269_370 0.1483145272 - - PREDICTED: U-box domain-containing protein 43 [Jatropha curcas]
7 Hb_121089_020 0.1484046935 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
8 Hb_027654_080 0.1486040805 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like isoform X1 [Jatropha curcas]
9 Hb_000483_100 0.1493890729 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 9-like [Jatropha curcas]
10 Hb_009189_050 0.1496315205 - - PREDICTED: uncharacterized protein LOC105648080 [Jatropha curcas]
11 Hb_002391_320 0.1520209387 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
12 Hb_000452_030 0.1524452412 - - Protein phosphatase 1 regulatory subunit, putative [Ricinus communis]
13 Hb_002259_170 0.1539826084 - - PREDICTED: internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial-like [Jatropha curcas]
14 Hb_000015_090 0.15475764 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
15 Hb_005162_140 0.1548502691 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 8 [Jatropha curcas]
16 Hb_004574_040 0.1554597002 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
17 Hb_000235_070 0.1590989035 - - PREDICTED: VIN3-like protein 2 [Jatropha curcas]
18 Hb_001474_050 0.1597872325 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
19 Hb_000979_140 0.1610660187 - - kinase family protein [Populus trichocarpa]
20 Hb_001898_130 0.1617774783 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002343_010 Hb_002343_010 Hb_001054_070 Hb_001054_070 Hb_002343_010--Hb_001054_070 Hb_002774_200 Hb_002774_200 Hb_002343_010--Hb_002774_200 Hb_012762_040 Hb_012762_040 Hb_002343_010--Hb_012762_040 Hb_001616_110 Hb_001616_110 Hb_002343_010--Hb_001616_110 Hb_001269_370 Hb_001269_370 Hb_002343_010--Hb_001269_370 Hb_121089_020 Hb_121089_020 Hb_002343_010--Hb_121089_020 Hb_001054_070--Hb_121089_020 Hb_001054_070--Hb_001269_370 Hb_002259_170 Hb_002259_170 Hb_001054_070--Hb_002259_170 Hb_000506_110 Hb_000506_110 Hb_001054_070--Hb_000506_110 Hb_008120_040 Hb_008120_040 Hb_001054_070--Hb_008120_040 Hb_002876_210 Hb_002876_210 Hb_002774_200--Hb_002876_210 Hb_002774_200--Hb_002259_170 Hb_002217_090 Hb_002217_090 Hb_002774_200--Hb_002217_090 Hb_000711_010 Hb_000711_010 Hb_002774_200--Hb_000711_010 Hb_004774_020 Hb_004774_020 Hb_002774_200--Hb_004774_020 Hb_011310_150 Hb_011310_150 Hb_002774_200--Hb_011310_150 Hb_000979_140 Hb_000979_140 Hb_012762_040--Hb_000979_140 Hb_001865_100 Hb_001865_100 Hb_012762_040--Hb_001865_100 Hb_000000_480 Hb_000000_480 Hb_012762_040--Hb_000000_480 Hb_001729_020 Hb_001729_020 Hb_012762_040--Hb_001729_020 Hb_000197_180 Hb_000197_180 Hb_012762_040--Hb_000197_180 Hb_000098_180 Hb_000098_180 Hb_012762_040--Hb_000098_180 Hb_027654_080 Hb_027654_080 Hb_001616_110--Hb_027654_080 Hb_002766_050 Hb_002766_050 Hb_001616_110--Hb_002766_050 Hb_000340_290 Hb_000340_290 Hb_001616_110--Hb_000340_290 Hb_000920_130 Hb_000920_130 Hb_001616_110--Hb_000920_130 Hb_001959_120 Hb_001959_120 Hb_001616_110--Hb_001959_120 Hb_001269_370--Hb_002259_170 Hb_001269_370--Hb_000506_110 Hb_001511_090 Hb_001511_090 Hb_001269_370--Hb_001511_090 Hb_000452_030 Hb_000452_030 Hb_001269_370--Hb_000452_030 Hb_001269_370--Hb_000920_130 Hb_001307_100 Hb_001307_100 Hb_001269_370--Hb_001307_100 Hb_002900_120 Hb_002900_120 Hb_121089_020--Hb_002900_120 Hb_024714_070 Hb_024714_070 Hb_121089_020--Hb_024714_070 Hb_000015_090 Hb_000015_090 Hb_121089_020--Hb_000015_090 Hb_007416_260 Hb_007416_260 Hb_121089_020--Hb_007416_260 Hb_121089_020--Hb_000711_010 Hb_002804_010 Hb_002804_010 Hb_121089_020--Hb_002804_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.65681 25.0748 20.1348 18.8039 0.826602 1.52842
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.51595 10.6949 10.2168 6.73513 21.8112

CAGE analysis