Hb_011310_150

Information

Type -
Description -
Location Contig11310: 77511-79718
Sequence    

Annotation

kegg
ID rcu:RCOM_0924080
description xenotropic and polytropic murine leukemia virus receptor ids-4, putative
nr
ID XP_012076581.1
description PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
swissprot
ID Q8LBH4
description SPX domain-containing protein 1 OS=Arabidopsis thaliana GN=SPX1 PE=2 SV=2
trembl
ID A0A067KMT8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07171 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03914: 77334-79723
cDNA
(Sanger)
(ID:Location)		 003_J11.ab1: 77696-79638 , 006_H09.ab1: 77727-79638 , 039_F07.ab1: 77842-79638

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011310_150 0.0 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
2 Hb_166876_010 0.1207584584 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
3 Hb_002774_200 0.1269366876 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
4 Hb_001160_100 0.1345672182 - - PREDICTED: probable plastid-lipid-associated protein 6, chloroplastic [Jatropha curcas]
5 Hb_002259_170 0.1530003552 - - PREDICTED: internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial-like [Jatropha curcas]
6 Hb_001269_370 0.1538566628 - - PREDICTED: U-box domain-containing protein 43 [Jatropha curcas]
7 Hb_000506_110 0.1566019958 - - PREDICTED: probable serine/threonine-protein kinase WNK11 [Jatropha curcas]
8 Hb_001766_070 0.1623523561 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003750_130 0.1624318306 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003964_040 0.1629079341 - - PREDICTED: uncharacterized protein LOC105630528 [Jatropha curcas]
11 Hb_000173_160 0.1647046311 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000673_010 0.165557099 - - PREDICTED: uncharacterized protein LOC105636554 isoform X1 [Jatropha curcas]
13 Hb_001511_090 0.1677829974 - - PREDICTED: uncharacterized protein LOC105645861 [Jatropha curcas]
14 Hb_002759_100 0.1696521355 - - hypothetical protein JCGZ_21777 [Jatropha curcas]
15 Hb_008120_040 0.1724946382 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
16 Hb_003125_220 0.1742509704 - - PREDICTED: CBS domain-containing protein CBSCBSPB1 [Jatropha curcas]
17 Hb_003408_060 0.1768166793 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
18 Hb_000680_010 0.1772474487 - - PREDICTED: putative hydrolase C777.06c [Populus euphratica]
19 Hb_007164_030 0.1774338145 transcription factor TF Family: Orphans two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]
20 Hb_002073_090 0.178536343 - - PREDICTED: copper transporter 6-like [Jatropha curcas]

Gene co-expression network

sample Hb_011310_150 Hb_011310_150 Hb_166876_010 Hb_166876_010 Hb_011310_150--Hb_166876_010 Hb_002774_200 Hb_002774_200 Hb_011310_150--Hb_002774_200 Hb_001160_100 Hb_001160_100 Hb_011310_150--Hb_001160_100 Hb_002259_170 Hb_002259_170 Hb_011310_150--Hb_002259_170 Hb_001269_370 Hb_001269_370 Hb_011310_150--Hb_001269_370 Hb_000506_110 Hb_000506_110 Hb_011310_150--Hb_000506_110 Hb_004242_110 Hb_004242_110 Hb_166876_010--Hb_004242_110 Hb_166876_010--Hb_001160_100 Hb_001675_140 Hb_001675_140 Hb_166876_010--Hb_001675_140 Hb_001629_090 Hb_001629_090 Hb_166876_010--Hb_001629_090 Hb_000397_150 Hb_000397_150 Hb_166876_010--Hb_000397_150 Hb_002876_210 Hb_002876_210 Hb_002774_200--Hb_002876_210 Hb_002774_200--Hb_002259_170 Hb_002217_090 Hb_002217_090 Hb_002774_200--Hb_002217_090 Hb_000711_010 Hb_000711_010 Hb_002774_200--Hb_000711_010 Hb_004774_020 Hb_004774_020 Hb_002774_200--Hb_004774_020 Hb_001160_100--Hb_001675_140 Hb_009847_030 Hb_009847_030 Hb_001160_100--Hb_009847_030 Hb_005511_140 Hb_005511_140 Hb_001160_100--Hb_005511_140 Hb_001511_090 Hb_001511_090 Hb_001160_100--Hb_001511_090 Hb_001160_100--Hb_002259_170 Hb_005235_070 Hb_005235_070 Hb_001160_100--Hb_005235_070 Hb_009288_010 Hb_009288_010 Hb_002259_170--Hb_009288_010 Hb_000452_030 Hb_000452_030 Hb_002259_170--Hb_000452_030 Hb_002259_170--Hb_001269_370 Hb_002259_170--Hb_001511_090 Hb_002259_170--Hb_000506_110 Hb_000137_010 Hb_000137_010 Hb_002259_170--Hb_000137_010 Hb_001269_370--Hb_000506_110 Hb_001269_370--Hb_001511_090 Hb_001269_370--Hb_000452_030 Hb_000920_130 Hb_000920_130 Hb_001269_370--Hb_000920_130 Hb_001307_100 Hb_001307_100 Hb_001269_370--Hb_001307_100 Hb_003462_180 Hb_003462_180 Hb_000506_110--Hb_003462_180 Hb_000506_110--Hb_001511_090 Hb_000160_140 Hb_000160_140 Hb_000506_110--Hb_000160_140 Hb_008120_040 Hb_008120_040 Hb_000506_110--Hb_008120_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5724 28.7195 20.026 15.7992 0.832692 5.40071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5405 8.60309 6.46819 5.41069 30.7768

CAGE analysis