Hb_004242_110

Information

Type -
Description -
Location Contig4242: 101767-102759
Sequence    

Annotation

kegg
ID rcu:RCOM_0987040
description hypothetical protein
nr
ID XP_012070707.1
description PREDICTED: uncharacterized protein LOC105632860 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KSA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00769 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41964: 101787-102781
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004242_110 0.0 - - PREDICTED: uncharacterized protein LOC105632860 [Jatropha curcas]
2 Hb_000349_270 0.0857855289 - - PREDICTED: uncharacterized protein ycf49 isoform X1 [Jatropha curcas]
3 Hb_166876_010 0.1077485146 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
4 Hb_001675_140 0.1127925458 - - hypothetical protein L484_026216 [Morus notabilis]
5 Hb_001160_100 0.1151286475 - - PREDICTED: probable plastid-lipid-associated protein 6, chloroplastic [Jatropha curcas]
6 Hb_001629_090 0.1166288646 - - conserved hypothetical protein [Ricinus communis]
7 Hb_009847_030 0.1236142097 - - zinc finger family protein [Populus trichocarpa]
8 Hb_003462_180 0.1249403848 transcription factor TF Family: GNAT PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]
9 Hb_003883_010 0.1254527667 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
10 Hb_002290_030 0.1269633507 - - PREDICTED: uncharacterized protein LOC105635877 isoform X1 [Jatropha curcas]
11 Hb_000680_010 0.1313109157 - - PREDICTED: putative hydrolase C777.06c [Populus euphratica]
12 Hb_001946_160 0.1315695036 - - putative chaperon P13.9 [Castanea sativa]
13 Hb_001430_020 0.1330395039 - - Actin-like ATPase superfamily protein isoform 1 [Theobroma cacao]
14 Hb_004375_050 0.1335355569 - - PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_027445_100 0.1343007781 - - PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]
16 Hb_005235_070 0.1348068168 - - PREDICTED: plastid lipid-associated protein 3, chloroplastic [Jatropha curcas]
17 Hb_000555_020 0.1424780299 - - APO protein 2, chloroplast precursor, putative [Ricinus communis]
18 Hb_000796_160 0.142495557 - - PREDICTED: nifU-like protein 1, chloroplastic [Jatropha curcas]
19 Hb_005276_010 0.1429423247 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
20 Hb_000941_100 0.1430459698 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_004242_110 Hb_004242_110 Hb_000349_270 Hb_000349_270 Hb_004242_110--Hb_000349_270 Hb_166876_010 Hb_166876_010 Hb_004242_110--Hb_166876_010 Hb_001675_140 Hb_001675_140 Hb_004242_110--Hb_001675_140 Hb_001160_100 Hb_001160_100 Hb_004242_110--Hb_001160_100 Hb_001629_090 Hb_001629_090 Hb_004242_110--Hb_001629_090 Hb_009847_030 Hb_009847_030 Hb_004242_110--Hb_009847_030 Hb_000796_160 Hb_000796_160 Hb_000349_270--Hb_000796_160 Hb_005235_070 Hb_005235_070 Hb_000349_270--Hb_005235_070 Hb_000349_270--Hb_009847_030 Hb_001935_100 Hb_001935_100 Hb_000349_270--Hb_001935_100 Hb_001410_070 Hb_001410_070 Hb_000349_270--Hb_001410_070 Hb_166876_010--Hb_001160_100 Hb_011310_150 Hb_011310_150 Hb_166876_010--Hb_011310_150 Hb_166876_010--Hb_001675_140 Hb_166876_010--Hb_001629_090 Hb_000397_150 Hb_000397_150 Hb_166876_010--Hb_000397_150 Hb_000023_360 Hb_000023_360 Hb_001675_140--Hb_000023_360 Hb_000270_480 Hb_000270_480 Hb_001675_140--Hb_000270_480 Hb_011671_260 Hb_011671_260 Hb_001675_140--Hb_011671_260 Hb_000086_080 Hb_000086_080 Hb_001675_140--Hb_000086_080 Hb_000128_060 Hb_000128_060 Hb_001675_140--Hb_000128_060 Hb_073973_090 Hb_073973_090 Hb_001675_140--Hb_073973_090 Hb_001160_100--Hb_001675_140 Hb_001160_100--Hb_009847_030 Hb_005511_140 Hb_005511_140 Hb_001160_100--Hb_005511_140 Hb_001511_090 Hb_001511_090 Hb_001160_100--Hb_001511_090 Hb_002259_170 Hb_002259_170 Hb_001160_100--Hb_002259_170 Hb_001160_100--Hb_005235_070 Hb_002290_030 Hb_002290_030 Hb_001629_090--Hb_002290_030 Hb_004375_050 Hb_004375_050 Hb_001629_090--Hb_004375_050 Hb_000983_070 Hb_000983_070 Hb_001629_090--Hb_000983_070 Hb_001711_120 Hb_001711_120 Hb_001629_090--Hb_001711_120 Hb_003462_180 Hb_003462_180 Hb_001629_090--Hb_003462_180 Hb_002762_110 Hb_002762_110 Hb_001629_090--Hb_002762_110 Hb_000003_680 Hb_000003_680 Hb_009847_030--Hb_000003_680 Hb_102948_010 Hb_102948_010 Hb_009847_030--Hb_102948_010 Hb_000291_180 Hb_000291_180 Hb_009847_030--Hb_000291_180 Hb_009847_030--Hb_005235_070 Hb_001430_020 Hb_001430_020 Hb_009847_030--Hb_001430_020 Hb_002218_020 Hb_002218_020 Hb_009847_030--Hb_002218_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.109 49.0206 108.86 57.7129 13.1123 21.0656
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.3895 56.9377 25.3711 10.0964 135.832

CAGE analysis