Hb_001160_100

Information

Type -
Description -
Location Contig1160: 52077-54952
Sequence    

Annotation

kegg
ID pop:POPTR_0008s16890g
description POPTRDRAFT_820821; plastid-lipid associated protein PAP
nr
ID XP_012069866.1
description PREDICTED: probable plastid-lipid-associated protein 6, chloroplastic [Jatropha curcas]
swissprot
ID Q9LW57
description Probable plastid-lipid-associated protein 6, chloroplastic OS=Arabidopsis thaliana GN=PAP6 PE=1 SV=1
trembl
ID A0A067L8C6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02357 PE=4 SV=1
Gene Ontology
ID GO:0005634
description probable plastid-lipid-associated protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04923: 52218-54931
cDNA
(Sanger)
(ID:Location)		 028_K07.ab1: 52248-54660 , 036_E17.ab1: 52248-54664

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001160_100 0.0 - - PREDICTED: probable plastid-lipid-associated protein 6, chloroplastic [Jatropha curcas]
2 Hb_001675_140 0.1034771742 - - hypothetical protein L484_026216 [Morus notabilis]
3 Hb_009847_030 0.1048727616 - - zinc finger family protein [Populus trichocarpa]
4 Hb_005511_140 0.1058755856 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
5 Hb_001511_090 0.1065361998 - - PREDICTED: uncharacterized protein LOC105645861 [Jatropha curcas]
6 Hb_002259_170 0.1078855313 - - PREDICTED: internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial-like [Jatropha curcas]
7 Hb_005235_070 0.1081351913 - - PREDICTED: plastid lipid-associated protein 3, chloroplastic [Jatropha curcas]
8 Hb_003462_180 0.1086621549 transcription factor TF Family: GNAT PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]
9 Hb_000506_110 0.1106663884 - - PREDICTED: probable serine/threonine-protein kinase WNK11 [Jatropha curcas]
10 Hb_000673_010 0.1115980169 - - PREDICTED: uncharacterized protein LOC105636554 isoform X1 [Jatropha curcas]
11 Hb_000023_360 0.1125446046 - - phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic [Jatropha curcas]
12 Hb_004242_110 0.1151286475 - - PREDICTED: uncharacterized protein LOC105632860 [Jatropha curcas]
13 Hb_166876_010 0.1177420716 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
14 Hb_001766_070 0.1201275733 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000137_010 0.1222826903 - - PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]
16 Hb_008173_150 0.1231721324 - - PREDICTED: uncharacterized protein LOC105645812 [Jatropha curcas]
17 Hb_022092_030 0.123788929 - - PREDICTED: lipoyl synthase, mitochondrial [Jatropha curcas]
18 Hb_000256_090 0.12399393 - - PREDICTED: uncharacterized protein LOC105637579 [Jatropha curcas]
19 Hb_000088_260 0.1241467835 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
20 Hb_000680_120 0.1241977808 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]

Gene co-expression network

sample Hb_001160_100 Hb_001160_100 Hb_001675_140 Hb_001675_140 Hb_001160_100--Hb_001675_140 Hb_009847_030 Hb_009847_030 Hb_001160_100--Hb_009847_030 Hb_005511_140 Hb_005511_140 Hb_001160_100--Hb_005511_140 Hb_001511_090 Hb_001511_090 Hb_001160_100--Hb_001511_090 Hb_002259_170 Hb_002259_170 Hb_001160_100--Hb_002259_170 Hb_005235_070 Hb_005235_070 Hb_001160_100--Hb_005235_070 Hb_000023_360 Hb_000023_360 Hb_001675_140--Hb_000023_360 Hb_000270_480 Hb_000270_480 Hb_001675_140--Hb_000270_480 Hb_011671_260 Hb_011671_260 Hb_001675_140--Hb_011671_260 Hb_000086_080 Hb_000086_080 Hb_001675_140--Hb_000086_080 Hb_000128_060 Hb_000128_060 Hb_001675_140--Hb_000128_060 Hb_073973_090 Hb_073973_090 Hb_001675_140--Hb_073973_090 Hb_000003_680 Hb_000003_680 Hb_009847_030--Hb_000003_680 Hb_102948_010 Hb_102948_010 Hb_009847_030--Hb_102948_010 Hb_000291_180 Hb_000291_180 Hb_009847_030--Hb_000291_180 Hb_009847_030--Hb_005235_070 Hb_001430_020 Hb_001430_020 Hb_009847_030--Hb_001430_020 Hb_002218_020 Hb_002218_020 Hb_009847_030--Hb_002218_020 Hb_000340_040 Hb_000340_040 Hb_005511_140--Hb_000340_040 Hb_005511_140--Hb_000023_360 Hb_000282_080 Hb_000282_080 Hb_005511_140--Hb_000282_080 Hb_001195_450 Hb_001195_450 Hb_005511_140--Hb_001195_450 Hb_000169_020 Hb_000169_020 Hb_005511_140--Hb_000169_020 Hb_005511_140--Hb_073973_090 Hb_001511_090--Hb_000340_040 Hb_000088_260 Hb_000088_260 Hb_001511_090--Hb_000088_260 Hb_001511_090--Hb_002259_170 Hb_001008_130 Hb_001008_130 Hb_001511_090--Hb_001008_130 Hb_001511_090--Hb_000023_360 Hb_001511_090--Hb_000169_020 Hb_009288_010 Hb_009288_010 Hb_002259_170--Hb_009288_010 Hb_000452_030 Hb_000452_030 Hb_002259_170--Hb_000452_030 Hb_001269_370 Hb_001269_370 Hb_002259_170--Hb_001269_370 Hb_000506_110 Hb_000506_110 Hb_002259_170--Hb_000506_110 Hb_000137_010 Hb_000137_010 Hb_002259_170--Hb_000137_010 Hb_000555_020 Hb_000555_020 Hb_005235_070--Hb_000555_020 Hb_003883_010 Hb_003883_010 Hb_005235_070--Hb_003883_010 Hb_005235_070--Hb_102948_010 Hb_000107_340 Hb_000107_340 Hb_005235_070--Hb_000107_340 Hb_005235_070--Hb_002218_020 Hb_002107_050 Hb_002107_050 Hb_005235_070--Hb_002107_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.7274 68.0266 68.2049 58.9682 14.9671 18.4866
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.3225 41.885 24.6302 15.2423 93.7677

CAGE analysis