Hb_166876_010

Information

Type -
Description -
Location Contig166876: 257-1250
Sequence    

Annotation

kegg
ID rcu:RCOM_0924080
description xenotropic and polytropic murine leukemia virus receptor ids-4, putative
nr
ID XP_002515522.1
description xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
swissprot
ID O48781
description SPX domain-containing protein 2 OS=Arabidopsis thaliana GN=SPX2 PE=2 SV=1
trembl
ID B9RP53
description Xenotropic and polytropic murine leukemia virus receptor ids-4, putative OS=Ricinus communis GN=RCOM_0924080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15388: 235-1181
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_166876_010 0.0 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
2 Hb_004242_110 0.1077485146 - - PREDICTED: uncharacterized protein LOC105632860 [Jatropha curcas]
3 Hb_001160_100 0.1177420716 - - PREDICTED: probable plastid-lipid-associated protein 6, chloroplastic [Jatropha curcas]
4 Hb_011310_150 0.1207584584 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
5 Hb_001675_140 0.1313165547 - - hypothetical protein L484_026216 [Morus notabilis]
6 Hb_001629_090 0.1412215198 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000397_150 0.1500866453 - - PREDICTED: probable flavin-containing monooxygenase 1 [Jatropha curcas]
8 Hb_000506_110 0.1508534503 - - PREDICTED: probable serine/threonine-protein kinase WNK11 [Jatropha curcas]
9 Hb_000023_360 0.1547205381 - - phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic [Jatropha curcas]
10 Hb_000680_010 0.1557330424 - - PREDICTED: putative hydrolase C777.06c [Populus euphratica]
11 Hb_004375_050 0.15578637 - - PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_005656_170 0.1563815425 - - PREDICTED: uncharacterized protein LOC105637447 isoform X1 [Jatropha curcas]
13 Hb_003462_180 0.1564732955 transcription factor TF Family: GNAT PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]
14 Hb_001269_370 0.1608828579 - - PREDICTED: U-box domain-containing protein 43 [Jatropha curcas]
15 Hb_005511_140 0.1629234786 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
16 Hb_000188_060 0.166193896 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 4-like [Jatropha curcas]
17 Hb_002290_030 0.1666737042 - - PREDICTED: uncharacterized protein LOC105635877 isoform X1 [Jatropha curcas]
18 Hb_005000_080 0.16706044 - - PREDICTED: thioredoxin-like 2, chloroplastic [Populus euphratica]
19 Hb_009847_030 0.1682553884 - - zinc finger family protein [Populus trichocarpa]
20 Hb_000175_050 0.168267345 - - -

Gene co-expression network

sample Hb_166876_010 Hb_166876_010 Hb_004242_110 Hb_004242_110 Hb_166876_010--Hb_004242_110 Hb_001160_100 Hb_001160_100 Hb_166876_010--Hb_001160_100 Hb_011310_150 Hb_011310_150 Hb_166876_010--Hb_011310_150 Hb_001675_140 Hb_001675_140 Hb_166876_010--Hb_001675_140 Hb_001629_090 Hb_001629_090 Hb_166876_010--Hb_001629_090 Hb_000397_150 Hb_000397_150 Hb_166876_010--Hb_000397_150 Hb_000349_270 Hb_000349_270 Hb_004242_110--Hb_000349_270 Hb_004242_110--Hb_001675_140 Hb_004242_110--Hb_001160_100 Hb_004242_110--Hb_001629_090 Hb_009847_030 Hb_009847_030 Hb_004242_110--Hb_009847_030 Hb_001160_100--Hb_001675_140 Hb_001160_100--Hb_009847_030 Hb_005511_140 Hb_005511_140 Hb_001160_100--Hb_005511_140 Hb_001511_090 Hb_001511_090 Hb_001160_100--Hb_001511_090 Hb_002259_170 Hb_002259_170 Hb_001160_100--Hb_002259_170 Hb_005235_070 Hb_005235_070 Hb_001160_100--Hb_005235_070 Hb_002774_200 Hb_002774_200 Hb_011310_150--Hb_002774_200 Hb_011310_150--Hb_001160_100 Hb_011310_150--Hb_002259_170 Hb_001269_370 Hb_001269_370 Hb_011310_150--Hb_001269_370 Hb_000506_110 Hb_000506_110 Hb_011310_150--Hb_000506_110 Hb_000023_360 Hb_000023_360 Hb_001675_140--Hb_000023_360 Hb_000270_480 Hb_000270_480 Hb_001675_140--Hb_000270_480 Hb_011671_260 Hb_011671_260 Hb_001675_140--Hb_011671_260 Hb_000086_080 Hb_000086_080 Hb_001675_140--Hb_000086_080 Hb_000128_060 Hb_000128_060 Hb_001675_140--Hb_000128_060 Hb_073973_090 Hb_073973_090 Hb_001675_140--Hb_073973_090 Hb_002290_030 Hb_002290_030 Hb_001629_090--Hb_002290_030 Hb_004375_050 Hb_004375_050 Hb_001629_090--Hb_004375_050 Hb_000983_070 Hb_000983_070 Hb_001629_090--Hb_000983_070 Hb_001711_120 Hb_001711_120 Hb_001629_090--Hb_001711_120 Hb_003462_180 Hb_003462_180 Hb_001629_090--Hb_003462_180 Hb_002762_110 Hb_002762_110 Hb_001629_090--Hb_002762_110 Hb_007441_310 Hb_007441_310 Hb_000397_150--Hb_007441_310 Hb_000114_150 Hb_000114_150 Hb_000397_150--Hb_000114_150 Hb_001628_120 Hb_001628_120 Hb_000397_150--Hb_001628_120 Hb_048093_010 Hb_048093_010 Hb_000397_150--Hb_048093_010 Hb_001195_770 Hb_001195_770 Hb_000397_150--Hb_001195_770 Hb_032631_070 Hb_032631_070 Hb_000397_150--Hb_032631_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.58933 13.5005 17.7177 13.7733 0.435425 3.89282
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3156 9.89309 6.93841 2.92111 27.3923

CAGE analysis