Hb_000114_150

Information

Type rubber biosynthesis
Description Gene Name: Geranyl geranyl diphosphate synthase
Location Contig114: 429433-431593
Sequence    

Annotation

kegg
ID rcu:RCOM_1373490
description geranyl geranyl pyrophosphate synthase, putative (EC:1.3.1.74)
nr
ID BAF98303.1
description geranylgeranyl-diphosphate synthase [Hevea brasiliensis]
swissprot
ID Q39108
description Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic OS=Arabidopsis thaliana GN=GGR PE=1 SV=2
trembl
ID A9ZN21
description Geranylgeranyl-diphosphate synthase OS=Hevea brasiliensis GN=HbGGPS PE=2 SV=1
Gene Ontology
ID GO:0004311
description heterodimeric geranylgeranyl pyrophosphate synthase small chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04169: 429503-431888
cDNA
(Sanger)
(ID:Location)		 025_H24.ab1: 429503-430913

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000114_150 0.0 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl-diphosphate synthase [Hevea brasiliensis]
2 Hb_000816_200 0.0790049291 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
3 Hb_000107_590 0.0845703687 - - PREDICTED: tricalbin-3 [Jatropha curcas]
4 Hb_000397_150 0.0852243008 - - PREDICTED: probable flavin-containing monooxygenase 1 [Jatropha curcas]
5 Hb_000189_450 0.0896223815 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
6 Hb_007441_310 0.0962857715 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
7 Hb_000983_070 0.1016393061 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005305_020 0.1033597797 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
9 Hb_001195_770 0.1056307517 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
10 Hb_001628_120 0.1066369068 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]
11 Hb_001009_260 0.1068689618 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
12 Hb_003124_120 0.1103042059 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
13 Hb_001898_180 0.1111679913 - - PREDICTED: translation initiation factor IF-1, chloroplastic [Jatropha curcas]
14 Hb_001677_220 0.1119954646 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
15 Hb_004644_030 0.1128189185 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
16 Hb_000661_090 0.1133496716 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
17 Hb_002762_110 0.1140967046 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000352_220 0.1152316151 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
19 Hb_003142_010 0.11621743 transcription factor TF Family: SET PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase ATX5-like [Populus euphratica]
20 Hb_003941_030 0.1172359474 - - Protease ecfE, putative [Ricinus communis]

Gene co-expression network

sample Hb_000114_150 Hb_000114_150 Hb_000816_200 Hb_000816_200 Hb_000114_150--Hb_000816_200 Hb_000107_590 Hb_000107_590 Hb_000114_150--Hb_000107_590 Hb_000397_150 Hb_000397_150 Hb_000114_150--Hb_000397_150 Hb_000189_450 Hb_000189_450 Hb_000114_150--Hb_000189_450 Hb_007441_310 Hb_007441_310 Hb_000114_150--Hb_007441_310 Hb_000983_070 Hb_000983_070 Hb_000114_150--Hb_000983_070 Hb_016461_030 Hb_016461_030 Hb_000816_200--Hb_016461_030 Hb_001195_770 Hb_001195_770 Hb_000816_200--Hb_001195_770 Hb_003124_120 Hb_003124_120 Hb_000816_200--Hb_003124_120 Hb_029920_030 Hb_029920_030 Hb_000816_200--Hb_029920_030 Hb_000816_200--Hb_000189_450 Hb_000816_200--Hb_007441_310 Hb_000107_590--Hb_000816_200 Hb_001628_120 Hb_001628_120 Hb_000107_590--Hb_001628_120 Hb_000107_590--Hb_007441_310 Hb_002305_010 Hb_002305_010 Hb_000107_590--Hb_002305_010 Hb_000866_050 Hb_000866_050 Hb_000107_590--Hb_000866_050 Hb_000397_150--Hb_007441_310 Hb_000397_150--Hb_001628_120 Hb_048093_010 Hb_048093_010 Hb_000397_150--Hb_048093_010 Hb_000397_150--Hb_001195_770 Hb_032631_070 Hb_032631_070 Hb_000397_150--Hb_032631_070 Hb_001677_220 Hb_001677_220 Hb_000189_450--Hb_001677_220 Hb_016219_030 Hb_016219_030 Hb_000189_450--Hb_016219_030 Hb_003142_010 Hb_003142_010 Hb_000189_450--Hb_003142_010 Hb_001080_070 Hb_001080_070 Hb_000189_450--Hb_001080_070 Hb_008375_010 Hb_008375_010 Hb_007441_310--Hb_008375_010 Hb_007441_310--Hb_032631_070 Hb_000585_110 Hb_000585_110 Hb_007441_310--Hb_000585_110 Hb_055690_010 Hb_055690_010 Hb_007441_310--Hb_055690_010 Hb_007441_310--Hb_001195_770 Hb_001898_180 Hb_001898_180 Hb_000983_070--Hb_001898_180 Hb_010128_020 Hb_010128_020 Hb_000983_070--Hb_010128_020 Hb_000983_070--Hb_000816_200 Hb_000983_070--Hb_003124_120 Hb_001629_090 Hb_001629_090 Hb_000983_070--Hb_001629_090 Hb_002053_010 Hb_002053_010 Hb_000983_070--Hb_002053_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.5984 21.4283 47.5351 60.4218 9.64059 16.5155
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.9529 29.403 26.1126 28.8228 138.588

CAGE analysis