Hb_002305_010

Information

Type -
Description -
Location Contig2305: 25075-27362
Sequence    

Annotation

kegg
ID rcu:RCOM_1557970
description S-adenosylmethionine-dependent methyltransferase, putative
nr
ID XP_002526980.1
description S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
swissprot
ID Q8G4L4
description Probable polyamine aminopropyl transferase OS=Bifidobacterium longum (strain NCC 2705) GN=speE PE=3 SV=1
trembl
ID B9SLW1
description S-adenosylmethionine-dependent methyltransferase, putative OS=Ricinus communis GN=RCOM_1557970 PE=4 SV=1
Gene Ontology
ID GO:0016740
description spermidine synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24230: 27219-27379
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002305_010 0.0 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
2 Hb_000107_590 0.1085068594 - - PREDICTED: tricalbin-3 [Jatropha curcas]
3 Hb_000951_120 0.1176399883 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
4 Hb_000805_010 0.1346857723 - - PREDICTED: uncharacterized protein LOC105629931 [Jatropha curcas]
5 Hb_000210_080 0.1360472808 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
6 Hb_000984_210 0.1389523592 - - PREDICTED: uncharacterized protein LOC104451821 [Eucalyptus grandis]
7 Hb_002374_450 0.1399719323 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
8 Hb_000395_010 0.1416730977 - - alpha/beta hydrolase domain containing protein 1,3, putative [Ricinus communis]
9 Hb_032631_070 0.1437063761 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
10 Hb_130589_010 0.1448947617 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
11 Hb_008375_010 0.1460557293 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
12 Hb_000866_050 0.1463666738 - - phosphate transporter [Manihot esculenta]
13 Hb_134813_010 0.1468616236 - - aldo/keto reductase, putative [Ricinus communis]
14 Hb_001628_120 0.147814978 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]
15 Hb_001348_090 0.1493422415 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
16 Hb_000300_680 0.1506555671 - - PREDICTED: uncharacterized protein LOC105632625 isoform X1 [Jatropha curcas]
17 Hb_003935_070 0.1509409901 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
18 Hb_158092_100 0.1512915082 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
19 Hb_000834_080 0.1519168275 - - PREDICTED: uncharacterized protein LOC105637718 [Jatropha curcas]
20 Hb_003778_020 0.1543810021 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]

Gene co-expression network

sample Hb_002305_010 Hb_002305_010 Hb_000107_590 Hb_000107_590 Hb_002305_010--Hb_000107_590 Hb_000951_120 Hb_000951_120 Hb_002305_010--Hb_000951_120 Hb_000805_010 Hb_000805_010 Hb_002305_010--Hb_000805_010 Hb_000210_080 Hb_000210_080 Hb_002305_010--Hb_000210_080 Hb_000984_210 Hb_000984_210 Hb_002305_010--Hb_000984_210 Hb_002374_450 Hb_002374_450 Hb_002305_010--Hb_002374_450 Hb_000114_150 Hb_000114_150 Hb_000107_590--Hb_000114_150 Hb_000816_200 Hb_000816_200 Hb_000107_590--Hb_000816_200 Hb_001628_120 Hb_001628_120 Hb_000107_590--Hb_001628_120 Hb_007441_310 Hb_007441_310 Hb_000107_590--Hb_007441_310 Hb_000866_050 Hb_000866_050 Hb_000107_590--Hb_000866_050 Hb_000951_120--Hb_002374_450 Hb_032631_070 Hb_032631_070 Hb_000951_120--Hb_032631_070 Hb_002075_030 Hb_002075_030 Hb_000951_120--Hb_002075_030 Hb_158092_100 Hb_158092_100 Hb_000951_120--Hb_158092_100 Hb_001649_030 Hb_001649_030 Hb_000951_120--Hb_001649_030 Hb_003752_090 Hb_003752_090 Hb_000951_120--Hb_003752_090 Hb_003935_070 Hb_003935_070 Hb_000805_010--Hb_003935_070 Hb_015141_010 Hb_015141_010 Hb_000805_010--Hb_015141_010 Hb_002759_220 Hb_002759_220 Hb_000805_010--Hb_002759_220 Hb_002817_040 Hb_002817_040 Hb_000805_010--Hb_002817_040 Hb_002235_110 Hb_002235_110 Hb_000805_010--Hb_002235_110 Hb_000395_010 Hb_000395_010 Hb_000805_010--Hb_000395_010 Hb_000210_080--Hb_000395_010 Hb_000210_080--Hb_158092_100 Hb_002529_090 Hb_002529_090 Hb_000210_080--Hb_002529_090 Hb_000388_060 Hb_000388_060 Hb_000210_080--Hb_000388_060 Hb_003680_090 Hb_003680_090 Hb_000210_080--Hb_003680_090 Hb_004348_040 Hb_004348_040 Hb_000210_080--Hb_004348_040 Hb_005228_040 Hb_005228_040 Hb_000984_210--Hb_005228_040 Hb_003226_250 Hb_003226_250 Hb_000984_210--Hb_003226_250 Hb_003728_090 Hb_003728_090 Hb_000984_210--Hb_003728_090 Hb_183963_010 Hb_183963_010 Hb_000984_210--Hb_183963_010 Hb_011310_040 Hb_011310_040 Hb_000984_210--Hb_011310_040 Hb_001348_090 Hb_001348_090 Hb_002374_450--Hb_001348_090 Hb_000414_080 Hb_000414_080 Hb_002374_450--Hb_000414_080 Hb_000441_050 Hb_000441_050 Hb_002374_450--Hb_000441_050 Hb_004242_170 Hb_004242_170 Hb_002374_450--Hb_004242_170 Hb_002044_160 Hb_002044_160 Hb_002374_450--Hb_002044_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.604558 1.51948 7.26327 8.60808 0.14231 2.73269
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.11398 1.92198 1.88203 3.86657 16.0838

CAGE analysis