Hb_003728_090

Information

Type -
Description -
Location Contig3728: 73740-75050
Sequence    

Annotation

kegg
ID tcc:TCM_041380
description hypothetical protein
nr
ID KDP34420.1
description hypothetical protein JCGZ_12701 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KQ40
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12701 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38082: 73963-74211 , PASA_asmbl_38083: 74224-75025
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003728_090 0.0 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
2 Hb_000984_210 0.1484256039 - - PREDICTED: uncharacterized protein LOC104451821 [Eucalyptus grandis]
3 Hb_003025_140 0.1496756837 - - conserved hypothetical protein [Ricinus communis]
4 Hb_163145_030 0.1540735338 - - PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Jatropha curcas]
5 Hb_005228_040 0.1664282496 - - PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
6 Hb_183963_010 0.1664710539 - - core region of GTP cyclohydrolase I family protein [Populus trichocarpa]
7 Hb_130589_010 0.1688559958 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
8 Hb_011224_100 0.1767870928 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000684_390 0.1789107924 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
10 Hb_005914_210 0.1829433443 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
11 Hb_009252_010 0.184142227 - - PREDICTED: kinesin light chain [Jatropha curcas]
12 Hb_021495_020 0.1852982968 - - chitinase, putative [Ricinus communis]
13 Hb_000705_250 0.1862534804 - - hypothetical protein CICLE_v10017607mg [Citrus clementina]
14 Hb_000809_240 0.1885502846 - - hypothetical protein POPTR_0007s11280g [Populus trichocarpa]
15 Hb_000920_310 0.1885639823 - - Ran GTPase binding protein, putative [Ricinus communis]
16 Hb_001628_120 0.1891785282 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]
17 Hb_000078_080 0.1907210725 transcription factor TF Family: AUX/IAA hypothetical protein JCGZ_17040 [Jatropha curcas]
18 Hb_000684_280 0.192629892 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Jatropha curcas]
19 Hb_000388_150 0.1929755337 - - hypothetical protein JCGZ_21651 [Jatropha curcas]
20 Hb_000016_200 0.1938816529 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003728_090 Hb_003728_090 Hb_000984_210 Hb_000984_210 Hb_003728_090--Hb_000984_210 Hb_003025_140 Hb_003025_140 Hb_003728_090--Hb_003025_140 Hb_163145_030 Hb_163145_030 Hb_003728_090--Hb_163145_030 Hb_005228_040 Hb_005228_040 Hb_003728_090--Hb_005228_040 Hb_183963_010 Hb_183963_010 Hb_003728_090--Hb_183963_010 Hb_130589_010 Hb_130589_010 Hb_003728_090--Hb_130589_010 Hb_000984_210--Hb_005228_040 Hb_002305_010 Hb_002305_010 Hb_000984_210--Hb_002305_010 Hb_003226_250 Hb_003226_250 Hb_000984_210--Hb_003226_250 Hb_000984_210--Hb_183963_010 Hb_011310_040 Hb_011310_040 Hb_000984_210--Hb_011310_040 Hb_114893_040 Hb_114893_040 Hb_003025_140--Hb_114893_040 Hb_003025_140--Hb_163145_030 Hb_011861_050 Hb_011861_050 Hb_003025_140--Hb_011861_050 Hb_005147_080 Hb_005147_080 Hb_003025_140--Hb_005147_080 Hb_010344_020 Hb_010344_020 Hb_003025_140--Hb_010344_020 Hb_000878_030 Hb_000878_030 Hb_003025_140--Hb_000878_030 Hb_005914_210 Hb_005914_210 Hb_163145_030--Hb_005914_210 Hb_001009_260 Hb_001009_260 Hb_163145_030--Hb_001009_260 Hb_163145_030--Hb_130589_010 Hb_000640_260 Hb_000640_260 Hb_163145_030--Hb_000640_260 Hb_177343_010 Hb_177343_010 Hb_163145_030--Hb_177343_010 Hb_009252_010 Hb_009252_010 Hb_005228_040--Hb_009252_010 Hb_001628_120 Hb_001628_120 Hb_005228_040--Hb_001628_120 Hb_005228_040--Hb_183963_010 Hb_005228_040--Hb_003226_250 Hb_000834_080 Hb_000834_080 Hb_005228_040--Hb_000834_080 Hb_011053_020 Hb_011053_020 Hb_183963_010--Hb_011053_020 Hb_000866_050 Hb_000866_050 Hb_183963_010--Hb_000866_050 Hb_026314_030 Hb_026314_030 Hb_183963_010--Hb_026314_030 Hb_011053_030 Hb_011053_030 Hb_183963_010--Hb_011053_030 Hb_000023_210 Hb_000023_210 Hb_183963_010--Hb_000023_210 Hb_130589_010--Hb_001009_260 Hb_000120_860 Hb_000120_860 Hb_130589_010--Hb_000120_860 Hb_002150_020 Hb_002150_020 Hb_130589_010--Hb_002150_020 Hb_000684_390 Hb_000684_390 Hb_130589_010--Hb_000684_390 Hb_004735_020 Hb_004735_020 Hb_130589_010--Hb_004735_020 Hb_000920_310 Hb_000920_310 Hb_130589_010--Hb_000920_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.556351 1.25184 3.87303 5.14325 0.420314 2.75356
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.926807 0.86103 4.47579 0.917447 9.78856

CAGE analysis